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The map label for this gene is rodA

Identifier: 15672878

GI number: 15672878

Start: 915962

End: 917206

Strand: Direct

Name: rodA

Synonym: L115706

Alternate gene names: 15672878

Gene position: 915962-917206 (Clockwise)

Preceding gene: 15672877

Following gene: 30024012

Centisome position: 38.72

GC content: 36.06

Gene sequence:

>1245_bases
TTGAAAAACAAGAAAGCAAATAGATTTACATTTGATTCACGAATTGATTATGGGCTAATTTTACCAGCCTTTATGTTAAT
ATTGATTGGTCTTTACGCACTTTATGTTGCAGTAAGTCATGACCACCCCACGCAAGCAACGAATCTAGTTGTTCAACAAG
GAACTTGGGTTATTGTCGGACTCTTTGTTGCTTTAATTGTCATGCATATGGATTCAAGGTTTTTATGGAATTTAACACCA
TTTTTTTACCTATTAGGTCTTATATTAATGGTTCTACCGATCTTTTTCTACGATAAAGCAACCTATGCTTCAACAGGTGC
AAAAAACTGGCTCGCTTTTGGAGGACGAAATCTTTTTCAACCGTCCGAGTTTATGAAACTTTCCTATATTTTATTTTCGG
CTAGGATTGTGGTTACCTTCCAAAATAATCTAAAAAAACGAGTACTCAAAGATGATTTCCGCTTAATCGGACTTCTGATA
CTTGAAACAATTCCAGTTGCCATTTTATCAGTCTTTCAAAAAGACTTCGGAACTTTCTTGGTCTTTGCAGCTATCTTTGC
TGGAATTATTTTAGTTGCTGGTATTTCTTGGAAAATACTTGCGCCAGCTTTTCTTTTCGTAGCAGCAGTAGCTGTAGGAA
TTGTTGCTCTAGTTGCTTCACCAGAAGGACAAAAATTTCTTGAAAGTACCAGTTTTGCTCAGTATCAGGTCAATCGTTTT
ATCGCATGGTTACATCCTTTTGAATATTCTCAGACTTTCAGTCTTCAACAAGCACGCTCATTGATTTCAGTTGGTGTTGG
TGGTCTTTGGGGTAAAGGAATTGGTGTAGCTAATGTCAATGTTCCCGTTCGAGAATCAGATATGATTTTCACTGTCATTG
CTGAAGATTTCGGATTTATTGGATCAGCCTTTTTGATTTTCCTTTACTTTATGCTGATTTATCGAATGATTCGAGTAACT
TTCAAATCAAATAATCAGTTTTATACCTATATTTCAACGGGTATTACTATGATGATTCTCTTCCATGTCTTTGAAAATAT
TGGAGCAGCGATTGGTGTTGTTCCTTTAACAGGTATTCCCTTACCCTTCATTTCTCAAGGGGGATCGGCCTTAATGGCAA
ATATCATCGGCTTAGGGCTCGTTTTATCAATGAAATATAATCAATTACCAGAATTTGTCAAGGAACAAAGACAAATTCCA
GTTAAGGGTGATAGTCGAAAAAATCGTCGAAGAAATAGACATTAA

Upstream 100 bases:

>100_bases
TAAAATTGTTTTTGTAAATTTGAAGCAAAAGTTAGAACTAAGTGATAGCAAATTGCCCAAATGAATTGCCAAAACAAGAT
TAAACTGACTGGAGCTAGTT

Downstream 100 bases:

>100_bases
CAATTAATAAGAATACAAAAAGTAAAAGTTACTGACAGAAAATTCAGTAGCTTTTTTATTACGATAAAATATTTAAAAGT
CTATATATACCAAGGAAGAA

Product: rod-shape determining protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKNKKANRFTFDSRIDYGLILPAFMLILIGLYALYVAVSHDHPTQATNLVVQQGTWVIVGLFVALIVMHMDSRFLWNLTP
FFYLLGLILMVLPIFFYDKATYASTGAKNWLAFGGRNLFQPSEFMKLSYILFSARIVVTFQNNLKKRVLKDDFRLIGLLI
LETIPVAILSVFQKDFGTFLVFAAIFAGIILVAGISWKILAPAFLFVAAVAVGIVALVASPEGQKFLESTSFAQYQVNRF
IAWLHPFEYSQTFSLQQARSLISVGVGGLWGKGIGVANVNVPVRESDMIFTVIAEDFGFIGSAFLIFLYFMLIYRMIRVT
FKSNNQFYTYISTGITMMILFHVFENIGAAIGVVPLTGIPLPFISQGGSALMANIIGLGLVLSMKYNQLPEFVKEQRQIP
VKGDSRKNRRRNRH

Sequences:

>Translated_414_residues
MKNKKANRFTFDSRIDYGLILPAFMLILIGLYALYVAVSHDHPTQATNLVVQQGTWVIVGLFVALIVMHMDSRFLWNLTP
FFYLLGLILMVLPIFFYDKATYASTGAKNWLAFGGRNLFQPSEFMKLSYILFSARIVVTFQNNLKKRVLKDDFRLIGLLI
LETIPVAILSVFQKDFGTFLVFAAIFAGIILVAGISWKILAPAFLFVAAVAVGIVALVASPEGQKFLESTSFAQYQVNRF
IAWLHPFEYSQTFSLQQARSLISVGVGGLWGKGIGVANVNVPVRESDMIFTVIAEDFGFIGSAFLIFLYFMLIYRMIRVT
FKSNNQFYTYISTGITMMILFHVFENIGAAIGVVPLTGIPLPFISQGGSALMANIIGLGLVLSMKYNQLPEFVKEQRQIP
VKGDSRKNRRRNRH
>Mature_414_residues
MKNKKANRFTFDSRIDYGLILPAFMLILIGLYALYVAVSHDHPTQATNLVVQQGTWVIVGLFVALIVMHMDSRFLWNLTP
FFYLLGLILMVLPIFFYDKATYASTGAKNWLAFGGRNLFQPSEFMKLSYILFSARIVVTFQNNLKKRVLKDDFRLIGLLI
LETIPVAILSVFQKDFGTFLVFAAIFAGIILVAGISWKILAPAFLFVAAVAVGIVALVASPEGQKFLESTSFAQYQVNRF
IAWLHPFEYSQTFSLQQARSLISVGVGGLWGKGIGVANVNVPVRESDMIFTVIAEDFGFIGSAFLIFLYFMLIYRMIRVT
FKSNNQFYTYISTGITMMILFHVFENIGAAIGVVPLTGIPLPFISQGGSALMANIIGLGLVLSMKYNQLPEFVKEQRQIP
VKGDSRKNRRRNRH

Specific function: This Is One Of The Proteins Responsible For The Rod Shape Of E. coli. Is Required For The Expression Of The Enzymatic Activity Of Pbp2, Which Is Thought To Synthesize Peptidoglycan In The Step Of Initiation Of Cell Elongation. [C]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=336, Percent_Identity=29.1666666666667, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1786277, Length=363, Percent_Identity=25.8953168044077, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 46491; Mature: 46491

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKANRFTFDSRIDYGLILPAFMLILIGLYALYVAVSHDHPTQATNLVVQQGTWVIVG
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEECCCHHHHH
LFVALIVMHMDSRFLWNLTPFFYLLGLILMVLPIFFYDKATYASTGAKNWLAFGGRNLFQ
HHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHCCCCCCC
PSEFMKLSYILFSARIVVTFQNNLKKRVLKDDFRLIGLLILETIPVAILSVFQKDFGTFL
CHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFAAIFAGIILVAGISWKILAPAFLFVAAVAVGIVALVASPEGQKFLESTSFAQYQVNRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHH
IAWLHPFEYSQTFSLQQARSLISVGVGGLWGKGIGVANVNVPVRESDMIFTVIAEDFGFI
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHH
GSAFLIFLYFMLIYRMIRVTFKSNNQFYTYISTGITMMILFHVFENIGAAIGVVPLTGIP
HHHHHHHHHHHHHHHHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHCHHEEEHCCCCCC
LPFISQGGSALMANIIGLGLVLSMKYNQLPEFVKEQRQIPVKGDSRKNRRRNRH
CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MKNKKANRFTFDSRIDYGLILPAFMLILIGLYALYVAVSHDHPTQATNLVVQQGTWVIVG
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEECCCHHHHH
LFVALIVMHMDSRFLWNLTPFFYLLGLILMVLPIFFYDKATYASTGAKNWLAFGGRNLFQ
HHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHCCCCCCC
PSEFMKLSYILFSARIVVTFQNNLKKRVLKDDFRLIGLLILETIPVAILSVFQKDFGTFL
CHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFAAIFAGIILVAGISWKILAPAFLFVAAVAVGIVALVASPEGQKFLESTSFAQYQVNRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHH
IAWLHPFEYSQTFSLQQARSLISVGVGGLWGKGIGVANVNVPVRESDMIFTVIAEDFGFI
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHH
GSAFLIFLYFMLIYRMIRVTFKSNNQFYTYISTGITMMILFHVFENIGAAIGVVPLTGIP
HHHHHHHHHHHHHHHHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHCHHEEEHCCCCCC
LPFISQGGSALMANIIGLGLVLSMKYNQLPEFVKEQRQIPVKGDSRKNRRRNRH
CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]