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The map label for this gene is yijD

Identifier: 15672853

GI number: 15672853

Start: 895101

End: 895583

Strand: Direct

Name: yijD

Synonym: L94760

Alternate gene names: 15672853

Gene position: 895101-895583 (Clockwise)

Preceding gene: 30024011

Following gene: 15672854

Centisome position: 37.84

GC content: 33.75

Gene sequence:

>483_bases
ATGTCTTTTGATGATAAAGCAATTAAATCAAGTAATTTAACAAATTATCGCAAAAAAACAGTAAGTACCGTTTTTCAAGC
TTATAACTTACTGACCTACATGAGTGCTTATGACAACGTCAAAACAGCCGTAAAAATCTCGTCAGTAAAATTTGAAAATG
AAAAAGCAGCAATAGAAGAAGCGTTCAATAAAGTAGGATTGAGCACAGACCTAATTTATAAACCTGTCAGTAAACTTTCA
GGTGGTCAGCAACAAAGAGTGGCCATCGCTAGAGCATTAGTTTTAAATCATGAGATAATTATTGCTGACGAACCCACAGG
GAATCTCGATGAAGAAACAACAGCCCAAATTGTTGAACTCTTTAAAGAAATTGCTCATAAAGATAATAAAATTGTGATTC
TGGTTACTCACGAAAATGAAGTTGCCAAAGCATCAGATGTTGTATTTACCCTTAAACATCGTAAATTTGAAAAGACAGCA
TAG

Upstream 100 bases:

>100_bases
TTGAAAAAGGCACGATGTATGCCATTCTAGGACAATCCGGCTAGGAAAAACTACTTTTCTTTCCCTGCTTGCCGGACTTG
ATACACCAAAATCTGGAAGT

Downstream 100 bases:

>100_bases
AATATAAAAACCATTACAATAATTGTAATGGTTTTTTATCCAGCCAAAACAGATAAACTCAAGGTTTATGGACAATTAAA
CTAGAGTTGCTCAATAATAC

Product: ABC transporter ATP binding protein

Products: ADP; phosphate; L-arginine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSFDDKAIKSSNLTNYRKKTVSTVFQAYNLLTYMSAYDNVKTAVKISSVKFENEKAAIEEAFNKVGLSTDLIYKPVSKLS
GGQQQRVAIARALVLNHEIIIADEPTGNLDEETTAQIVELFKEIAHKDNKIVILVTHENEVAKASDVVFTLKHRKFEKTA

Sequences:

>Translated_160_residues
MSFDDKAIKSSNLTNYRKKTVSTVFQAYNLLTYMSAYDNVKTAVKISSVKFENEKAAIEEAFNKVGLSTDLIYKPVSKLS
GGQQQRVAIARALVLNHEIIIADEPTGNLDEETTAQIVELFKEIAHKDNKIVILVTHENEVAKASDVVFTLKHRKFEKTA
>Mature_159_residues
SFDDKAIKSSNLTNYRKKTVSTVFQAYNLLTYMSAYDNVKTAVKISSVKFENEKAAIEEAFNKVGLSTDLIYKPVSKLSG
GQQQRVAIARALVLNHEIIIADEPTGNLDEETTAQIVELFKEIAHKDNKIVILVTHENEVAKASDVVFTLKHRKFEKTA

Specific function: Part Of The Binding-Protein-Dependent Transport System For Arginine. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787089, Length=153, Percent_Identity=38.562091503268, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1786398, Length=136, Percent_Identity=37.5, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787105, Length=149, Percent_Identity=31.5436241610738, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787712, Length=151, Percent_Identity=37.7483443708609, Blast_Score=87, Evalue=4e-19,
Organism=Escherichia coli, GI1789873, Length=137, Percent_Identity=35.036496350365, Blast_Score=87, Evalue=5e-19,
Organism=Escherichia coli, GI1786703, Length=145, Percent_Identity=31.7241379310345, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1788225, Length=155, Percent_Identity=33.5483870967742, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI87081834, Length=127, Percent_Identity=37.007874015748, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788644, Length=150, Percent_Identity=31.3333333333333, Blast_Score=80, Evalue=5e-17,
Organism=Escherichia coli, GI1787029, Length=140, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI87081709, Length=136, Percent_Identity=33.8235294117647, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786872, Length=148, Percent_Identity=35.8108108108108, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790544, Length=129, Percent_Identity=34.1085271317829, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786563, Length=131, Percent_Identity=34.3511450381679, Blast_Score=74, Evalue=4e-15,
Organism=Escherichia coli, GI1787370, Length=143, Percent_Identity=32.8671328671329, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789032, Length=147, Percent_Identity=25.8503401360544, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=130, Percent_Identity=32.3076923076923, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788450, Length=154, Percent_Identity=26.6233766233766, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1788506, Length=99, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1790162, Length=135, Percent_Identity=34.8148148148148, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI48995001, Length=157, Percent_Identity=25.4777070063694, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1790534, Length=116, Percent_Identity=32.7586206896552, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790467, Length=135, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=9e-13,
Organism=Escherichia coli, GI1787500, Length=89, Percent_Identity=40.4494382022472, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI87082267, Length=121, Percent_Identity=30.5785123966942, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789963, Length=84, Percent_Identity=41.6666666666667, Blast_Score=63, Evalue=8e-12,
Organism=Escherichia coli, GI1787164, Length=134, Percent_Identity=33.5820895522388, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI48994883, Length=135, Percent_Identity=29.6296296296296, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87081791, Length=124, Percent_Identity=28.2258064516129, Blast_Score=60, Evalue=6e-11,
Organism=Escherichia coli, GI1789962, Length=97, Percent_Identity=35.0515463917526, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 17922; Mature: 17790

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDDKAIKSSNLTNYRKKTVSTVFQAYNLLTYMSAYDNVKTAVKISSVKFENEKAAIEE
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEEEECCHHHHHHH
AFNKVGLSTDLIYKPVSKLSGGQQQRVAIARALVLNHEIIIADEPTGNLDEETTAQIVEL
HHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHH
FKEIAHKDNKIVILVTHENEVAKASDVVFTLKHRKFEKTA
HHHHHCCCCCEEEEEECCCCHHHHHHHEEEECCCCCCCCC
>Mature Secondary Structure 
SFDDKAIKSSNLTNYRKKTVSTVFQAYNLLTYMSAYDNVKTAVKISSVKFENEKAAIEE
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEEEECCHHHHHHH
AFNKVGLSTDLIYKPVSKLSGGQQQRVAIARALVLNHEIIIADEPTGNLDEETTAQIVEL
HHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHH
FKEIAHKDNKIVILVTHENEVAKASDVVFTLKHRKFEKTA
HHHHHCCCCCEEEEEECCCCHHHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-arginine [Periplasm]; H2O [C]

Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]