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The map label for this gene is ybdJ

Identifier: 15672117

GI number: 15672117

Start: 136564

End: 137244

Strand: Direct

Name: ybdJ

Synonym: L136552

Alternate gene names: 15672117

Gene position: 136564-137244 (Clockwise)

Preceding gene: 15672116

Following gene: 15672118

Centisome position: 5.77

GC content: 30.84

Gene sequence:

>681_bases
ATGATTGAACGTATAAAAAAATTTTTACGGACTAAATTCAAACCGCTTTTATTGCTATTAGTGACGGTTATCCTTTACAA
TGGTTGGACTCCCCACTTGGGGATTTTTCCACCAACTTTCTATGATTTTGCTTTTAATTATTATGGATTTGTGGATATTT
TAACTTTTTTAGTAATAATAGTTATTGCTTATAAAAATGATGCTTTTAAAAAGATTTTTGATATATTTCGTCCAAAAAAT
TTGTTATTTATTTTGTTTTTTATTGTTGGTGGAAATATTTTTATTGCTTTGGCACATCATTTATATTTTCAGATGACACC
AGCTTTAGAAGCTTTTCCAGAACATTCAATAGATTTGGCAAATTATTTTGCACGGACTCCTTTTTGGACGCATTCATTAG
ATTTATTCGTGATTGGACCGATTAGTGAAGAGTTGATTTATCGGGAATATCTTTATCGACTTTTTGACAAAAAATGCTTG
GCTTGTTTTGTGAGCGTCACTATGTTTGCATGGGTGCATACTGGTTTTACTTACTCTTTCTTTTTATATCTGCCTATAAG
TTTAGTTGTTACTTTGGCCTATCACCGGCGTAAAGCAATTGGGGAAAGTATTGCTCTTCACAGTTCAATAAATCTGATAA
ATACTTATTTACCAAATTTATTAAGCTTTTGGGTATTCTGA

Upstream 100 bases:

>100_bases
CATGGAGGATATAATCTAATGGTTTTGATTTTTCATATTATTATTTAATATAGAATTTATTATAAGTAGATTTGTTATTT
TTTATTAACGTGGGGCTTTT

Downstream 100 bases:

>100_bases
GTAACTAGTGATTAGGCTTCTTATTCTTTAGTAATTTTCAAATTAAAATTCGCTTTTTATTTAAAATTTAAAAGCCTTGA
TATGTAGTGACCCCCAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MIERIKKFLRTKFKPLLLLLVTVILYNGWTPHLGIFPPTFYDFAFNYYGFVDILTFLVIIVIAYKNDAFKKIFDIFRPKN
LLFILFFIVGGNIFIALAHHLYFQMTPALEAFPEHSIDLANYFARTPFWTHSLDLFVIGPISEELIYREYLYRLFDKKCL
ACFVSVTMFAWVHTGFTYSFFLYLPISLVVTLAYHRRKAIGESIALHSSINLINTYLPNLLSFWVF

Sequences:

>Translated_226_residues
MIERIKKFLRTKFKPLLLLLVTVILYNGWTPHLGIFPPTFYDFAFNYYGFVDILTFLVIIVIAYKNDAFKKIFDIFRPKN
LLFILFFIVGGNIFIALAHHLYFQMTPALEAFPEHSIDLANYFARTPFWTHSLDLFVIGPISEELIYREYLYRLFDKKCL
ACFVSVTMFAWVHTGFTYSFFLYLPISLVVTLAYHRRKAIGESIALHSSINLINTYLPNLLSFWVF
>Mature_226_residues
MIERIKKFLRTKFKPLLLLLVTVILYNGWTPHLGIFPPTFYDFAFNYYGFVDILTFLVIIVIAYKNDAFKKIFDIFRPKN
LLFILFFIVGGNIFIALAHHLYFQMTPALEAFPEHSIDLANYFARTPFWTHSLDLFVIGPISEELIYREYLYRLFDKKCL
ACFVSVTMFAWVHTGFTYSFFLYLPISLVVTLAYHRRKAIGESIALHSSINLINTYLPNLLSFWVF

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0177 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBDJ_LACLA (Q9CJ66)

Other databases:

- EMBL:   AE005176
- PIR:   G86641
- RefSeq:   NP_266291.1
- GeneID:   1113742
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L136552
- NMPDR:   fig|272623.1.peg.142
- HOGENOM:   HBG107965
- OMA:   TLAYHRR
- ProtClustDB:   CLSK697048
- BioCyc:   LLAC272623:L136552-MONOMER
- InterPro:   IPR003675

Pfam domain/function: PF02517 Abi

EC number: NA

Molecular weight: Translated: 26607; Mature: 26607

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb283da8)-; HASH(0xbd63218)-; HASH(0xb0aee9c)-; HASH(0xc2a6d84)-; HASH(0xc456760)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERIKKFLRTKFKPLLLLLVTVILYNGWTPHLGIFPPTFYDFAFNYYGFVDILTFLVII
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VIAYKNDAFKKIFDIFRPKNLLFILFFIVGGNIFIALAHHLYFQMTPALEAFPEHSIDLA
HHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
NYFARTPFWTHSLDLFVIGPISEELIYREYLYRLFDKKCLACFVSVTMFAWVHTGFTYSF
HHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
FLYLPISLVVTLAYHRRKAIGESIALHSSINLINTYLPNLLSFWVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MIERIKKFLRTKFKPLLLLLVTVILYNGWTPHLGIFPPTFYDFAFNYYGFVDILTFLVII
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VIAYKNDAFKKIFDIFRPKNLLFILFFIVGGNIFIALAHHLYFQMTPALEAFPEHSIDLA
HHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
NYFARTPFWTHSLDLFVIGPISEELIYREYLYRLFDKKCLACFVSVTMFAWVHTGFTYSF
HHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
FLYLPISLVVTLAYHRRKAIGESIALHSSINLINTYLPNLLSFWVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471