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The map label for this gene is ygcF [C]

Identifier: 15669841

GI number: 15669841

Start: 1627680

End: 1628411

Strand: Direct

Name: ygcF [C]

Synonym: MJ1645

Alternate gene names: 15669841

Gene position: 1627680-1628411 (Clockwise)

Preceding gene: 15669840

Following gene: 15669842

Centisome position: 97.76

GC content: 30.05

Gene sequence:

>732_bases
ATGATAAGGGAAATTTTTAACTCAATAATGGGAGAAGGAAAATATATAGGGAGAAGGTTTATATTTGTGAGATTTGCTGG
ATGTCCATTAAACTGTGTTTATTGCGATGAAGAGAGCAAAGGATATTTTAATAGAGTGGAAAAAATCCCTGGAAGTGGAG
AATTTGAAACTCTGCAAAAGATGGAGATTGAAGACATAATAAACGCTATAGATAAGCTAAAAACACCAGATTTGTTTGCA
GTATCTTTTACAGGAGGAGAGCCATTACTCTACCATAAACAAATAAAAGAAATCGCTGAAATTTTAAAAGATAAAGGATA
CAGAACTTTCTTAGAGAGCAATGGGATGTTTCCAGAGAGAATTTTTTATTTTGATATCGCATCCATTGATATAAAGTTGA
AAGAGCATTTTGAGTATATAAAAGATGAAGATTATGAAAAACTCTATAAAAATGAGCTTAAAACAATAAAAAAGCTGTAT
AATTTAAATTCTGATATTTATGCAAAGGTTGTTATAATGGAAGAGACAAATATAGAGGATGTAAAAATAATAGCAAAGGA
TTTGAGTGATATAGGAAATATAACTTTATGCATTCAACCAGTAACCCCCCATGGAAATATAAAATCTCCTTCTCAAAGGA
AATTGTTTGAAATTATGGAAGCATGTGGAGAGTATTTGAAAGATAATGTTATGCTAACAATACAAATGCATAAGTATTTG
GGGATGTTATAA

Upstream 100 bases:

>100_bases
TGGGATTATTGTAATAATTGTTGCCCAAATTTTAGAGATTGTTGCATATTTCTCTTTACCTGATGATTTAAAAAGTGAGA
ATTAAATAAAATGGGGTAAG

Downstream 100 bases:

>100_bases
CATATACTGTAAAATCATTATTGAATGAGGGAGATTATGAATAAAGAATTATTAAAAAAGGTTATAGAGTTAAAAAGTAA
TGGACTTACAATTGGAGAGA

Product: coenzyme PQQ synthesis protein III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIREIFNSIMGEGKYIGRRFIFVRFAGCPLNCVYCDEESKGYFNRVEKIPGSGEFETLQKMEIEDIINAIDKLKTPDLFA
VSFTGGEPLLYHKQIKEIAEILKDKGYRTFLESNGMFPERIFYFDIASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLY
NLNSDIYAKVVIMEETNIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEYLKDNVMLTIQMHKYL
GML

Sequences:

>Translated_243_residues
MIREIFNSIMGEGKYIGRRFIFVRFAGCPLNCVYCDEESKGYFNRVEKIPGSGEFETLQKMEIEDIINAIDKLKTPDLFA
VSFTGGEPLLYHKQIKEIAEILKDKGYRTFLESNGMFPERIFYFDIASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLY
NLNSDIYAKVVIMEETNIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEYLKDNVMLTIQMHKYL
GML
>Mature_243_residues
MIREIFNSIMGEGKYIGRRFIFVRFAGCPLNCVYCDEESKGYFNRVEKIPGSGEFETLQKMEIEDIINAIDKLKTPDLFA
VSFTGGEPLLYHKQIKEIAEILKDKGYRTFLESNGMFPERIFYFDIASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLY
NLNSDIYAKVVIMEETNIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEYLKDNVMLTIQMHKYL
GML

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1645_METJA (Q59039)

Other databases:

- EMBL:   L77117
- PIR:   C64505
- RefSeq:   NP_248655.1
- ProteinModelPortal:   Q59039
- SMR:   Q59039
- GeneID:   1452554
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1645
- NMPDR:   fig|243232.1.peg.1692
- TIGR:   MJ1645
- HOGENOM:   HBG507714
- OMA:   LESNGMF
- ProtClustDB:   CLSK876655
- BioCyc:   MJAN243232:MJ_1645-MONOMER
- InterPro:   IPR007197

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 28280; Mature: 28280

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIREIFNSIMGEGKYIGRRFIFVRFAGCPLNCVYCDEESKGYFNRVEKIPGSGEFETLQK
CHHHHHHHHHCCCHHHCEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHH
MEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEIAEILKDKGYRTFLESNGMFPER
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEHHHCCCCCCHH
IFYFDIASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLYNLNSDIYAKVVIMEETNIED
EEEEEEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHH
VKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEYLKDNVMLTIQMHKYL
HHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEHHHH
GML
CCC
>Mature Secondary Structure
MIREIFNSIMGEGKYIGRRFIFVRFAGCPLNCVYCDEESKGYFNRVEKIPGSGEFETLQK
CHHHHHHHHHCCCHHHCEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHH
MEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEIAEILKDKGYRTFLESNGMFPER
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEHHHCCCCCCHH
IFYFDIASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLYNLNSDIYAKVVIMEETNIED
EEEEEEEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHH
VKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEYLKDNVMLTIQMHKYL
HHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEHHHH
GML
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087