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The map label for this gene is hofB [C]

Identifier: 15669475

GI number: 15669475

Start: 1234313

End: 1235125

Strand: Reverse

Name: hofB [C]

Synonym: MJ1287

Alternate gene names: 15669475

Gene position: 1235125-1234313 (Counterclockwise)

Preceding gene: 15669476

Following gene: 15669474

Centisome position: 74.18

GC content: 32.84

Gene sequence:

>813_bases
TTGCCAACAGATTTAATAAGATATGGGAGTATTTCTCCAGAGATGCTTGCATATCTTTGGTTACTCATTGAATATAAAAA
TTCTATTATGGTTGCTGGAGAGGTAGCTACTGGAAAAACCACCCTTTTAAATGCATTCTCTCTTTTCATCCCTCCTCAAA
TGAAAATCGTATCTATTGAGGATACTCCAGAAATTAGGTTGTATCATGAAAACTGGATTGCTGGAACTACAAGAAGTGGA
TTCGGTGGAGAAGAATATGAAATAACTATGATGGATTTATTAAAAGCGGCTTTAAGGCAAAGACCAGATTATTTAATTGT
TGGAGAGGTTAGAGGTGAGGAGGCGAAGATATTATTTCAAGCAATAACTACAGGACATTTGGCGTTATCAACGATACACG
CAAAATCCCCAGAGGCAGTTATAAGGAGGTTGAATGCTGAACCAATGAACATTCCAAAGATTATGCTTGAACAACTAAAT
GCCATATGTATGCAGGTTAGATTGATTTATAAAGGAAGATTTGTTAGAAGAACTAAGAGTATAACTGAGATTGTTGAATA
CGACCCAAAAATTGATGATATTATATTACATGATGTTTTTAGGTGGAATCCTGAAGATGATACATTTGAATTTTCTGGAG
AAAGTTATTTGTTAAGAAGAATAGCTGAGTTCATTGGAATTTCAGAAAAAGAGATTATTAATGAACTTCATAGTAGAGCA
GAATTTTTGAGGAATTTATGTAAAACAAAACCAAATTTTGAAGAATTTGTTAAAAAGATATGTGAGTATAAAGAATATCA
TAAAGGTGATTGA

Upstream 100 bases:

>100_bases
GTTCTCTCCCAGATGGTAGCAGGCTAAATGTAACCCTTGGAAGGGATATCTCAGATATGGTTCAACATTTACAATAAGAA
AATTCACACACACTCCTATA

Downstream 100 bases:

>100_bases
ATTGGATTTTTTTGCCAATTTAAAGTTAAGGTATTATAAATTGGCTATGAAACTTTTTAAAATAGAGGATGAGAAATTTG
ATGAAATTTTATTAAAAGCA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MPTDLIRYGSISPEMLAYLWLLIEYKNSIMVAGEVATGKTTLLNAFSLFIPPQMKIVSIEDTPEIRLYHENWIAGTTRSG
FGGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILFQAITTGHLALSTIHAKSPEAVIRRLNAEPMNIPKIMLEQLN
AICMQVRLIYKGRFVRRTKSITEIVEYDPKIDDIILHDVFRWNPEDDTFEFSGESYLLRRIAEFIGISEKEIINELHSRA
EFLRNLCKTKPNFEEFVKKICEYKEYHKGD

Sequences:

>Translated_270_residues
MPTDLIRYGSISPEMLAYLWLLIEYKNSIMVAGEVATGKTTLLNAFSLFIPPQMKIVSIEDTPEIRLYHENWIAGTTRSG
FGGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILFQAITTGHLALSTIHAKSPEAVIRRLNAEPMNIPKIMLEQLN
AICMQVRLIYKGRFVRRTKSITEIVEYDPKIDDIILHDVFRWNPEDDTFEFSGESYLLRRIAEFIGISEKEIINELHSRA
EFLRNLCKTKPNFEEFVKKICEYKEYHKGD
>Mature_269_residues
PTDLIRYGSISPEMLAYLWLLIEYKNSIMVAGEVATGKTTLLNAFSLFIPPQMKIVSIEDTPEIRLYHENWIAGTTRSGF
GGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILFQAITTGHLALSTIHAKSPEAVIRRLNAEPMNIPKIMLEQLNA
ICMQVRLIYKGRFVRRTKSITEIVEYDPKIDDIILHDVFRWNPEDDTFEFSGESYLLRRIAEFIGISEKEIINELHSRAE
FLRNLCKTKPNFEEFVKKICEYKEYHKGD

Specific function: Unknown

COG id: COG0630

COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family

Homologues:

Organism=Escherichia coli, GI1786296, Length=165, Percent_Identity=32.7272727272727, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789723, Length=145, Percent_Identity=33.7931034482759, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1287_METJA (Q58683)

Other databases:

- EMBL:   L77117
- PIR:   F64460
- RefSeq:   NP_248285.1
- ProteinModelPortal:   Q58683
- SMR:   Q58683
- GeneID:   1452187
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1287
- NMPDR:   fig|243232.1.peg.1322
- TIGR:   MJ1287
- HOGENOM:   HBG645977
- OMA:   RDANADS
- BioCyc:   MJAN243232:MJ_1287-MONOMER
- GO:   GO:0005622
- GO:   GO:0006810
- InterPro:   IPR001482

Pfam domain/function: PF00437 GSPII_E

EC number: NA

Molecular weight: Translated: 31255; Mature: 31123

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDLIRYGSISPEMLAYLWLLIEYKNSIMVAGEVATGKTTLLNAFSLFIPPQMKIVSIE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEC
DTPEIRLYHENWIAGTTRSGFGGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILFQ
CCCCEEEEECCEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
AITTGHLALSTIHAKSPEAVIRRLNAEPMNIPKIMLEQLNAICMQVRLIYKGRFVRRTKS
HHHHCHHHEEHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
ITEIVEYDPKIDDIILHDVFRWNPEDDTFEFSGESYLLRRIAEFIGISEKEIINELHSRA
HHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHH
EFLRNLCKTKPNFEEFVKKICEYKEYHKGD
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PTDLIRYGSISPEMLAYLWLLIEYKNSIMVAGEVATGKTTLLNAFSLFIPPQMKIVSIE
CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEC
DTPEIRLYHENWIAGTTRSGFGGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILFQ
CCCCEEEEECCEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
AITTGHLALSTIHAKSPEAVIRRLNAEPMNIPKIMLEQLNAICMQVRLIYKGRFVRRTKS
HHHHCHHHEEHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
ITEIVEYDPKIDDIILHDVFRWNPEDDTFEFSGESYLLRRIAEFIGISEKEIINELHSRA
HHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHH
EFLRNLCKTKPNFEEFVKKICEYKEYHKGD
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087