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The map label for this gene is rps6e

Identifier: 15669446

GI number: 15669446

Start: 1202283

End: 1202678

Strand: Direct

Name: rps6e

Synonym: MJ1260

Alternate gene names: 15669446

Gene position: 1202283-1202678 (Clockwise)

Preceding gene: 15669445

Following gene: 15669447

Centisome position: 72.21

GC content: 36.87

Gene sequence:

>396_bases
ATGCCAACAGCAAAATTCGTTGTTGCAGACCCAAAAACAGGAAGATGCTATCAAATTGAGGCAGATAACACACCATTAGT
TGGTAAGAAAATTGGGGAAGTATTTGATGGAAAAATTATAGGATTAGAGGGCTACAAATTACAAATAAGAGGAGGAACTG
ACTCAAGCGGTTTCCCAATGAGACCAGATATCCACGGAAGTAGAAAGGTTAGAGTTTTATTGAGTGCTCCTCCTGGGTTT
AAACCAAAAAGAAAAGGAGAAAGAAGAAGAAAAACAGTTAGAGGAAACACAATAGCTCCTGATATTGTCCAAATTAACGT
TAAGGTTGTTGAATATGGAGAGAAATCAATCCCTGAATTGTTAGGATTAGAAGGTGGAGAAAATCAAGAACAATAA

Upstream 100 bases:

>100_bases
ATAAAAATGCCCTTAAAAAATCTGTTTTATCAAAACTTAAAAGTTAATTTAAAAATTAGAAACCAAACAAATAACAAAAA
TAAAAATAGGAGGGAATACT

Downstream 100 bases:

>100_bases
ATAAAATATAGCTCCTAATTTTATTTTTATTTTATTTATCTGTGTTTAAATATTGTAGTGGTGATTTCTGTAGTTTTTTG
ACTATTTTGATACTCCGAGT

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MPTAKFVVADPKTGRCYQIEADNTPLVGKKIGEVFDGKIIGLEGYKLQIRGGTDSSGFPMRPDIHGSRKVRVLLSAPPGF
KPKRKGERRRKTVRGNTIAPDIVQINVKVVEYGEKSIPELLGLEGGENQEQ

Sequences:

>Translated_131_residues
MPTAKFVVADPKTGRCYQIEADNTPLVGKKIGEVFDGKIIGLEGYKLQIRGGTDSSGFPMRPDIHGSRKVRVLLSAPPGF
KPKRKGERRRKTVRGNTIAPDIVQINVKVVEYGEKSIPELLGLEGGENQEQ
>Mature_130_residues
PTAKFVVADPKTGRCYQIEADNTPLVGKKIGEVFDGKIIGLEGYKLQIRGGTDSSGFPMRPDIHGSRKVRVLLSAPPGFK
PKRKGERRRKTVRGNTIAPDIVQINVKVVEYGEKSIPELLGLEGGENQEQ

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

Organism=Homo sapiens, GI17158044, Length=123, Percent_Identity=34.9593495934959, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325167, Length=126, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6319658, Length=126, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17737290, Length=124, Percent_Identity=36.2903225806452, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24640437, Length=93, Percent_Identity=39.7849462365591, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_METJA (P54067)

Other databases:

- EMBL:   L77117
- PIR:   C64457
- RefSeq:   NP_248256.1
- GeneID:   1452158
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1260
- NMPDR:   fig|243232.1.peg.1293
- TIGR:   MJ1260
- HOGENOM:   HBG497422
- OMA:   DGFPMRP
- ProtClustDB:   PRK04290
- BioCyc:   MJAN243232:MJ_1260-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 14372; Mature: 14241

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTAKFVVADPKTGRCYQIEADNTPLVGKKIGEVFDGKIIGLEGYKLQIRGGTDSSGFPM
CCCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCC
RPDIHGSRKVRVLLSAPPGFKPKRKGERRRKTVRGNTIAPDIVQINVKVVEYGEKSIPEL
CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHH
LGLEGGENQEQ
HCCCCCCCCCC
>Mature Secondary Structure 
PTAKFVVADPKTGRCYQIEADNTPLVGKKIGEVFDGKIIGLEGYKLQIRGGTDSSGFPM
CCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCC
RPDIHGSRKVRVLLSAPPGFKPKRKGERRRKTVRGNTIAPDIVQINVKVVEYGEKSIPEL
CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHH
LGLEGGENQEQ
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087