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The map label for this gene is 15669185

Identifier: 15669185

GI number: 15669185

Start: 923632

End: 924315

Strand: Reverse

Name: 15669185

Synonym: MJ0995

Alternate gene names: NA

Gene position: 924315-923632 (Counterclockwise)

Preceding gene: 15669187

Following gene: 15669184

Centisome position: 55.52

GC content: 26.32

Gene sequence:

>684_bases
ATGTATGGTGATTATATGAAGTATATGAAAAAGATAGTGTTGTTTTTGATAATAAATATACTGCCTATACTCATCTTAGG
TTTATATTTATATGCAAATATAGGAGGAGCTGAGGATGTTAAGGAGGTTATAGAAAATTCACCATTTAAAGAATTCACTT
ATATAGACCATAAAACCCTTATGATGCTCAAAAATGATGTTAATCTCAAAAACATGCCAGAATTCTATAAAGAGTCAATA
ATTTTAATTAATGGGATTTATATTGGAAATCATGGGAGTTTTGGTATAAAAATACCACTTGGATTTTTAATTAAATACAT
TCCAATTGATAATTTTAAGTATTATAATGGAGTTTTGATAAAAAATCTAAATGAAGATGATTTAGGAAAAGCTGAGATGA
ATGATTTAGTTAATACAATCCCTCCGAACTATAAGGATGTTCTTATATATAGGGAGAACTATACAATTGGCATATATTAT
GACCTAAATTCAAATAAAACATATTTGATAGAGGTATTTAGAAAACCAAATAATCAAGAAATTGATACTGAAAAACTTAG
AAATGAATTGTTGCAAAAAACAAATGCAGTTGATTGTAATGTAGTTGATATGGGGGACAAAGTTTATGTTTATTTGGAGT
TTAATGGGATAGATTTAAATTTAATAAATAACGGGATAACATGA

Upstream 100 bases:

>100_bases
CTCCAACTTCTAACAATTTCTCTATTTTTTCCAAGTTAAGCATGTTATCACCAAAGACATTAAAATACTTTTTATAAAAT
ATTTTAACTATTATTATAAG

Downstream 100 bases:

>100_bases
AAGTTGTGATAACGAGACCTAAGGAAAGGGCTGATGTTTTTGCCAGTTTATTAAAAAAAGAAGGGTTTGAACCAATAATA
TTTCCAACATTGGAGATTGT

Product: VAR1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MYGDYMKYMKKIVLFLIINILPILILGLYLYANIGGAEDVKEVIENSPFKEFTYIDHKTLMMLKNDVNLKNMPEFYKESI
ILINGIYIGNHGSFGIKIPLGFLIKYIPIDNFKYYNGVLIKNLNEDDLGKAEMNDLVNTIPPNYKDVLIYRENYTIGIYY
DLNSNKTYLIEVFRKPNNQEIDTEKLRNELLQKTNAVDCNVVDMGDKVYVYLEFNGIDLNLINNGIT

Sequences:

>Translated_227_residues
MYGDYMKYMKKIVLFLIINILPILILGLYLYANIGGAEDVKEVIENSPFKEFTYIDHKTLMMLKNDVNLKNMPEFYKESI
ILINGIYIGNHGSFGIKIPLGFLIKYIPIDNFKYYNGVLIKNLNEDDLGKAEMNDLVNTIPPNYKDVLIYRENYTIGIYY
DLNSNKTYLIEVFRKPNNQEIDTEKLRNELLQKTNAVDCNVVDMGDKVYVYLEFNGIDLNLINNGIT
>Mature_227_residues
MYGDYMKYMKKIVLFLIINILPILILGLYLYANIGGAEDVKEVIENSPFKEFTYIDHKTLMMLKNDVNLKNMPEFYKESI
ILINGIYIGNHGSFGIKIPLGFLIKYIPIDNFKYYNGVLIKNLNEDDLGKAEMNDLVNTIPPNYKDVLIYRENYTIGIYY
DLNSNKTYLIEVFRKPNNQEIDTEKLRNELLQKTNAVDCNVVDMGDKVYVYLEFNGIDLNLINNGIT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y995_METJA (Q58402)

Other databases:

- EMBL:   L77117
- PIR:   C64424
- RefSeq:   NP_247990.1
- ProteinModelPortal:   Q58402
- GeneID:   1451893
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0995
- NMPDR:   fig|243232.1.peg.1027
- TIGR:   MJ0995
- OMA:   YLEFNGI
- ProtClustDB:   CLSK2517677
- BioCyc:   MJAN243232:MJ_0995-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26360; Mature: 26360

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xddc2b48)-; HASH(0xd008250)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGDYMKYMKKIVLFLIINILPILILGLYLYANIGGAEDVKEVIENSPFKEFTYIDHKTL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCEE
MMLKNDVNLKNMPEFYKESIILINGIYIGNHGSFGIKIPLGFLIKYIPIDNFKYYNGVLI
EEEECCCCCCCCCHHHHCCEEEEEEEEECCCCCEEEEECHHHEEEEECCCCCEEECCEEE
KNLNEDDLGKAEMNDLVNTIPPNYKDVLIYRENYTIGIYYDLNSNKTYLIEVFRKPNNQE
ECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEEEEEEECCCCEEEEEEEECCCCCC
IDTEKLRNELLQKTNAVDCNVVDMGDKVYVYLEFNGIDLNLINNGIT
CCHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCEEEEEECCCCH
>Mature Secondary Structure
MYGDYMKYMKKIVLFLIINILPILILGLYLYANIGGAEDVKEVIENSPFKEFTYIDHKTL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCEE
MMLKNDVNLKNMPEFYKESIILINGIYIGNHGSFGIKIPLGFLIKYIPIDNFKYYNGVLI
EEEECCCCCCCCCHHHHCCEEEEEEEEECCCCCEEEEECHHHEEEEECCCCCEEECCEEE
KNLNEDDLGKAEMNDLVNTIPPNYKDVLIYRENYTIGIYYDLNSNKTYLIEVFRKPNNQE
ECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEEEEEEECCCCEEEEEEEECCCCCC
IDTEKLRNELLQKTNAVDCNVVDMGDKVYVYLEFNGIDLNLINNGIT
CCHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCEEEEEECCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087