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The map label for this gene is hypD [C]

Identifier: 15669183

GI number: 15669183

Start: 921832

End: 922908

Strand: Reverse

Name: hypD [C]

Synonym: MJ0993

Alternate gene names: 15669183

Gene position: 922908-921832 (Counterclockwise)

Preceding gene: 15669184

Following gene: 15669180

Centisome position: 55.43

GC content: 35.84

Gene sequence:

>1077_bases
ATGATTAATATCAATGATAGAGCCTTAATAAAAAAAGCCATAGATAAGATAAACAAACTTGCTGAGAAGATAGATAAATT
AAAGATTATGCACGTCTGTGGAAGTCATGAGCACACAATCTGTAAGTATGGGATTAGGGATGTTCTGCCAGAGAATATAA
CCGTTGTTCCAGGGCCGGGTTGTCCAGTTTGTGTAACAACTCAAAAAGAGATAGATACAGCCATATATTTAGCTGACAAT
GGATATGTAATAACCACTCTTGGAGATATGTATAGAGTGCCGGGAAGTGAAAAATCTTTGATGGAAAAGCAATCTGAGGG
TTGTGATGTTAGAATTGTCTATAGTATAAGTGAAGCAGTAAAGATGGCTAAGAAGGAGAGAGATAAGAAGTTTGTTTTTG
TGGCAATAGGTTTTGAAACCACTGCTCCAACTACTGGGGCTGAACTAATAAGTTTAAAAAATAAAGATGTTAATAACTTC
TTTATCCTAAATTGCCACAGGCAGACTCCTCCAGTTATGGAGTTCTTGTTAAATGAGGGAGTTTATTTAGATGCATTTAT
ATGCCCAGGACATGTTTCAACAATCACCGGATTAAAGCCTTATTATGGGTTGTGTGAAAAATACAAAGCTCCAATGGTTG
TTGCTGGCTTTGAGCCAATAGATGTGTTAATGGCTATAATAATGATTTTAAAGCAAGTCATCAGTGGAGAGGCAAAGGTT
GAAAATGAATATATTAGAGCAGTTAAGCCAGAAGGTAATGTTTTAGCTCAAAAAATAATAAATGAAGTTTTTGAAAGCAT
AGATGTTCCTTGGAGAGGTTTCCCAGTTGTTAAAAATGGTGGTTTTGGATTGAGGGAGAAGTATAAGAAATTTGACATCT
ATGAGCATGAGGATATTCCAGAGATTAAAGAGAAAATTCCTAAAGGTTGTATATGTGATAAGATTTTGAGAGGAGAGAAA
CTGCCAACTGACTGCCCATTGTTTGGAACGGTTTGCACTCCATTAAATCCAGTTGGTAGTTGTATGGTTTCAGATGAGGG
AACGTGTAGGATATTTTATAAGTATAGGAGGATTTAA

Upstream 100 bases:

>100_bases
AAAGTTATTGAAAAATTTGGTTTTAAACCATTAATTCCTAAAGTATATACGATTGAAGGGATGTTAGAAGTTATTAGAAC
ATTAAAGGAGAGGTAGGAAA

Downstream 100 bases:

>100_bases
AACAAATTTTTTCTATTTTTAGGATTTTACTCATTAAAGTTAGCTTCATACTCTTTTATATACATTTTTATACAAATTCA
AATTTGTCATGATTTATCAT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MININDRALIKKAIDKINKLAEKIDKLKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCVTTQKEIDTAIYLADN
GYVITTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEAVKMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNF
FILNCHRQTPPVMEFLLNEGVYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEAKV
ENEYIRAVKPEGNVLAQKIINEVFESIDVPWRGFPVVKNGGFGLREKYKKFDIYEHEDIPEIKEKIPKGCICDKILRGEK
LPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYRRI

Sequences:

>Translated_358_residues
MININDRALIKKAIDKINKLAEKIDKLKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCVTTQKEIDTAIYLADN
GYVITTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEAVKMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNF
FILNCHRQTPPVMEFLLNEGVYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEAKV
ENEYIRAVKPEGNVLAQKIINEVFESIDVPWRGFPVVKNGGFGLREKYKKFDIYEHEDIPEIKEKIPKGCICDKILRGEK
LPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYRRI
>Mature_358_residues
MININDRALIKKAIDKINKLAEKIDKLKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCVTTQKEIDTAIYLADN
GYVITTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEAVKMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNF
FILNCHRQTPPVMEFLLNEGVYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEAKV
ENEYIRAVKPEGNVLAQKIINEVFESIDVPWRGFPVVKNGGFGLREKYKKFDIYEHEDIPEIKEKIPKGCICDKILRGEK
LPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYRRI

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family

Homologues:

Organism=Escherichia coli, GI1789084, Length=354, Percent_Identity=40.9604519774011, Blast_Score=280, Evalue=1e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y993_METJA (Q58400)

Other databases:

- EMBL:   L77117
- PIR:   A64424
- RefSeq:   NP_247988.1
- ProteinModelPortal:   Q58400
- SMR:   Q58400
- GeneID:   1451891
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0993
- NMPDR:   fig|243232.1.peg.1025
- TIGR:   MJ0993
- HOGENOM:   HBG287941
- OMA:   GACAAHW
- ProtClustDB:   PRK15062
- BioCyc:   MJAN243232:MJ_0993-MONOMER
- InterPro:   IPR002780
- PIRSF:   PIRSF005622
- TIGRFAMs:   TIGR00075

Pfam domain/function: PF01924 HypD

EC number: NA

Molecular weight: Translated: 40143; Mature: 40143

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MININDRALIKKAIDKINKLAEKIDKLKIMHVCGSHEHTICKYGIRDVLPENITVVPGPG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCC
CPVCVTTQKEIDTAIYLADNGYVITTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEAV
CCEEEECHHHCCEEEEEECCCEEEEEECHHHCCCCCHHHHHHHHCCCCCEEEEEEHHHHH
KMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNFFILNCHRQTPPVMEFLLNEG
HHHHHCCCCEEEEEEEECCCCCCCCCHHEEEECCCCCCEEEEEEECCCCCHHHHHHHCCC
VYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEAKV
CEEEEEECCCCHHHHCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
ENEYIRAVKPEGNVLAQKIINEVFESIDVPWRGFPVVKNGGFGLREKYKKFDIYEHEDIP
CCHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCH
EIKEKIPKGCICDKILRGEKLPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYRRI
HHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MININDRALIKKAIDKINKLAEKIDKLKIMHVCGSHEHTICKYGIRDVLPENITVVPGPG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCC
CPVCVTTQKEIDTAIYLADNGYVITTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEAV
CCEEEECHHHCCEEEEEECCCEEEEEECHHHCCCCCHHHHHHHHCCCCCEEEEEEHHHHH
KMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNFFILNCHRQTPPVMEFLLNEG
HHHHHCCCCEEEEEEEECCCCCCCCCHHEEEECCCCCCEEEEEEECCCCCHHHHHHHCCC
VYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEAKV
CEEEEEECCCCHHHHCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
ENEYIRAVKPEGNVLAQKIINEVFESIDVPWRGFPVVKNGGFGLREKYKKFDIYEHEDIP
CCHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCH
EIKEKIPKGCICDKILRGEKLPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYRRI
HHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087