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The map label for this gene is ypdF [C]

Identifier: 15668992

GI number: 15668992

Start: 728993

End: 730036

Strand: Reverse

Name: ypdF [C]

Synonym: MJ0806

Alternate gene names: 15668992

Gene position: 730036-728993 (Counterclockwise)

Preceding gene: 15668995

Following gene: 15668974

Centisome position: 43.85

GC content: 29.89

Gene sequence:

>1044_bases
TTGCAAAAAACTATTGGTGATATTATGAACAATAGGATAGAGAGGTTTTTAAAGTATATGGAAAGTGAAGGTATAAAAAA
GGCTGTGATTTTAAAGAAAGAGAATATAAACTACTTCTTAGGTAAATACTTTATGAGCTTTTCTGTTTTAGTTTTTGAAG
AACAGCCATATTTATACGTTGGAAAGCTTGACAAAGATTATGCTGAAGAGCATTTTAATTTTTTAGAGATTAGAGAGTTT
AAAAGCTGGGAAGAGATATTTAAAGGATGCGATGGAGTTGAAAAAGAATTATCAATTGGTTATTTAAAATACATTGATAA
AGAGTATAAGATAATCTCTGACAAAATCAAAGAGATGAGGATGATTAAAGATAAAGAGGAGATAAAACTAATTAAAAAAG
CTGCTGAGATTAGTGATAAAGCTATAAATTGGGTTTTAAATAATTTAGATGAAGTTAAAAATCTAACAGAGTATGAGTTG
GTTGCTGAGATTGAATATATTATGAAAAAACATGGTTCAATAAAGCCGGCATTTGATTCTATCGTTGTTTCTGGTAAAAA
AACTTCATTCCCTCACGCTTTACCTACAAAAGATAAGATTGCAGATATTTTATTAGTTGATATTGGAGCAGTTTATGAGG
GCTACTGTTCAGACATAACAAGGACGTTTTTATTAAAAGACGATGAAGAGATGAAAAAAATTTATAACTTAGTCTATGAA
GCAAAAAAAGTTGCTGAAGAGCATTTAAAGGAAGGAATTTCAGCTAAACAAATTGATAACATAGTTAGAGAGTTCTTCAA
TGATTATAAAGAGCTATTTATTCACTCTTTGGGGCATGGCGTTGGATTGGAGGTTCATGAAGAGCCAAGGCTATCAAACA
AATTGAAAGATGATGAGGATATTATTTTAAAAGAGGGCATGGTTGTAACCATTGAGCCGGGCTTATATTTAAAAGACAAG
TTTGGTGTGAGAATAGAAGATTTATATTTAGTTAAAAAGAATGGATTTGAAAAGTTAAGTAAAGCAGAGATTTCAGAATA
TTAA

Upstream 100 bases:

>100_bases
TTAATTTAGTTTTTTGCAAAAGTTATTAAAATTCATAATGAAAAATTGAACGCCTTCCCAAAGGAAGGCGTTCATAAGTT
CCTTATGTACTTCAAATGTT

Downstream 100 bases:

>100_bases
ATTAACGGCAATGTCTTTCTCAAATCTCTCTCAATCTTGTCTATCTCCTTGGCATAATTAATAGCTATTTCTCTCATAAC
TTTATCTATATCTTTTATTC

Product: X-pro aminopeptidase PepQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MQKTIGDIMNNRIERFLKYMESEGIKKAVILKKENINYFLGKYFMSFSVLVFEEQPYLYVGKLDKDYAEEHFNFLEIREF
KSWEEIFKGCDGVEKELSIGYLKYIDKEYKIISDKIKEMRMIKDKEEIKLIKKAAEISDKAINWVLNNLDEVKNLTEYEL
VAEIEYIMKKHGSIKPAFDSIVVSGKKTSFPHALPTKDKIADILLVDIGAVYEGYCSDITRTFLLKDDEEMKKIYNLVYE
AKKVAEEHLKEGISAKQIDNIVREFFNDYKELFIHSLGHGVGLEVHEEPRLSNKLKDDEDIILKEGMVVTIEPGLYLKDK
FGVRIEDLYLVKKNGFEKLSKAEISEY

Sequences:

>Translated_347_residues
MQKTIGDIMNNRIERFLKYMESEGIKKAVILKKENINYFLGKYFMSFSVLVFEEQPYLYVGKLDKDYAEEHFNFLEIREF
KSWEEIFKGCDGVEKELSIGYLKYIDKEYKIISDKIKEMRMIKDKEEIKLIKKAAEISDKAINWVLNNLDEVKNLTEYEL
VAEIEYIMKKHGSIKPAFDSIVVSGKKTSFPHALPTKDKIADILLVDIGAVYEGYCSDITRTFLLKDDEEMKKIYNLVYE
AKKVAEEHLKEGISAKQIDNIVREFFNDYKELFIHSLGHGVGLEVHEEPRLSNKLKDDEDIILKEGMVVTIEPGLYLKDK
FGVRIEDLYLVKKNGFEKLSKAEISEY
>Mature_347_residues
MQKTIGDIMNNRIERFLKYMESEGIKKAVILKKENINYFLGKYFMSFSVLVFEEQPYLYVGKLDKDYAEEHFNFLEIREF
KSWEEIFKGCDGVEKELSIGYLKYIDKEYKIISDKIKEMRMIKDKEEIKLIKKAAEISDKAINWVLNNLDEVKNLTEYEL
VAEIEYIMKKHGSIKPAFDSIVVSGKKTSFPHALPTKDKIADILLVDIGAVYEGYCSDITRTFLLKDDEEMKKIYNLVYE
AKKVAEEHLKEGISAKQIDNIVREFFNDYKELFIHSLGHGVGLEVHEEPRLSNKLKDDEDIILKEGMVVTIEPGLYLKDK
FGVRIEDLYLVKKNGFEKLSKAEISEY

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family

Homologues:

Organism=Homo sapiens, GI264681563, Length=165, Percent_Identity=31.5151515151515, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1788728, Length=241, Percent_Identity=34.8547717842324, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1789275, Length=260, Percent_Identity=28.8461538461538, Blast_Score=111, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17509539, Length=230, Percent_Identity=27.8260869565217, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17508215, Length=292, Percent_Identity=28.0821917808219, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6321118, Length=287, Percent_Identity=29.9651567944251, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6320922, Length=296, Percent_Identity=26.0135135135135, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322999, Length=296, Percent_Identity=26.3513513513513, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920384, Length=268, Percent_Identity=26.1194029850746, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21357079, Length=301, Percent_Identity=29.5681063122924, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y806_METJA (Q58216)

Other databases:

- EMBL:   L77117
- PIR:   F64400
- RefSeq:   NP_247796.1
- ProteinModelPortal:   Q58216
- GeneID:   1451688
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0806
- NMPDR:   fig|243232.1.peg.833
- TIGR:   MJ0806
- HOGENOM:   HBG545079
- OMA:   ENAVFYE
- ProtClustDB:   CLSK876338
- BioCyc:   MJAN243232:MJ_0806-MONOMER
- GO:   GO:0006508
- InterPro:   IPR000587
- InterPro:   IPR001714
- InterPro:   IPR000994
- InterPro:   IPR001131
- Gene3D:   G3DSA:3.90.230.10
- PANTHER:   PTHR10804
- PRINTS:   PR00599

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24; SSF55920 Peptidase_M24_cat_core

EC number: 3.4.-.- [C]

Molecular weight: Translated: 40549; Mature: 40549

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS00491 PROLINE_PEPTIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTIGDIMNNRIERFLKYMESEGIKKAVILKKENINYFLGKYFMSFSVLVFEEQPYLYV
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHEEEEEECCCEEEE
GKLDKDYAEEHFNFLEIREFKSWEEIFKGCDGVEKELSIGYLKYIDKEYKIISDKIKEMR
ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIKDKEEIKLIKKAAEISDKAINWVLNNLDEVKNLTEYELVAEIEYIMKKHGSIKPAFDS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHH
IVVSGKKTSFPHALPTKDKIADILLVDIGAVYEGYCSDITRTFLLKDDEEMKKIYNLVYE
HEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AKKVAEEHLKEGISAKQIDNIVREFFNDYKELFIHSLGHGVGLEVHEEPRLSNKLKDDED
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHCCCCCCC
IILKEGMVVTIEPGLYLKDKFGVRIEDLYLVKKNGFEKLSKAEISEY
EEEECCEEEEECCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MQKTIGDIMNNRIERFLKYMESEGIKKAVILKKENINYFLGKYFMSFSVLVFEEQPYLYV
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHEEEEEECCCEEEE
GKLDKDYAEEHFNFLEIREFKSWEEIFKGCDGVEKELSIGYLKYIDKEYKIISDKIKEMR
ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIKDKEEIKLIKKAAEISDKAINWVLNNLDEVKNLTEYELVAEIEYIMKKHGSIKPAFDS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHH
IVVSGKKTSFPHALPTKDKIADILLVDIGAVYEGYCSDITRTFLLKDDEEMKKIYNLVYE
HEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AKKVAEEHLKEGISAKQIDNIVREFFNDYKELFIHSLGHGVGLEVHEEPRLSNKLKDDED
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHCCCCCCC
IILKEGMVVTIEPGLYLKDKFGVRIEDLYLVKKNGFEKLSKAEISEY
EEEECCEEEEECCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087