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The map label for this gene is ygcB [C]

Identifier: 15668552

GI number: 15668552

Start: 341045

End: 343231

Strand: Direct

Name: ygcB [C]

Synonym: MJ0376

Alternate gene names: 15668552

Gene position: 341045-343231 (Clockwise)

Preceding gene: 15668551

Following gene: 15668553

Centisome position: 20.48

GC content: 29.49

Gene sequence:

>2187_bases
TTGCATGATATTGGAAAGATAACAGAGGGGTTCCAAAATAACATAAAAAAAGGAAAAAGAAGCAATAAACATCCCCATCC
ACTTTATGCACTTCCCATTATAAAAAATATTGAGTTTGATTATCTTTTCGATATTCCAATTGAAGTTTTTGCTATTTTAT
CTCATCATACACAACTTTACAACAACTTATATGCTGATTATCAACAATACAAAAAAGGGACTTTTTTAATAGAAGAAATC
AAAGAATTTATAAAAAATTCTAAAGAAGCTTATGAATCTCTTGGATTTTCAAAGTTTTTTGAGTTTGAGGACTTAAAGAT
AGAGGATATTCCAAAAGATGCAAAACCTTTAGAACTACACAGATTAAGAAGGAAATATTGGATAGAGGCAAATAATTACA
TCAAATCACTAAGCTTTGATGATAAAATAAAAATAAAGTCAATATTTTCATTTATGTTTTCTATTCTTCAATTGTGTGAT
GATTTTGCAAGTTTAAACTTTAGTGAATATGCAAAAGACAGGGAAGGAATTTTTGATGATGTTTTAGAGAATCCAGAAAT
TTATGTTCCTACTTTAAATATTGATAATCCAATATCGTTTATTCTAAAAGATTATGAACCATACAAATTCCAAAAAGAAC
TTTACAACTCAAAAAATAAGTTTGTGATGTTGTTTGCTCCTTGTGGGAGAGGTAAAACTGAAGGAGCGTTACTTTGGGCA
TTGAATGCATTAAAAAACTTCAAAAGAAACAAAATCATCTTAGCAATGCCTACGCAAGTAACAAGCAATGCAATGTATGA
TAGATTGGTAAAGATCTTTGGAGAGGAGAACGTCGGTTTATTCCATGGAAAGAGCTTTATAAAATTGAGGGACTCAAAAG
AAATAGAGGATGAAGACGATTTAGAGGAAATTAGGGATGAAAATTTCAAGGGAAATGTATTTTTTAAACCAATAACAATA
ACAACCATTGACCATGTTATATACTCTTTTGTTCATGGATTTTCTCAGGCGGATTTTGCTTTGGGAAATATTCAAAATTC
AGTTATAATCTTTGATGAAGTTCATTACTATGAAAAATACACATTAGAGCATTTATTAACTCTTTTTGATATTTTAAGGA
GGATGGATATTCCTCATTTACTTATGAGTGGAACACTGCCAAACTTTTTAATGAACAACCTTGAAGGTTATGAACTTGTA
GTTGATGAGGAAGGGTTAAATTACAAACCTTTTAAACTTAAATGTTCAGAAAATCATTTAATTTGGAAAGAGGATGATGA
ATGGAAAGTTAATGAAAATATAATTAACGAAATAATAGAGAATTATAAAAAAGGATTATCTCAAGCGATTATCTTAAATA
CTGTTGAAAGAGCAAGGGAATTTTATAAAGCAGTAAGGGACAAAGTCCCAGCGATTCTCTATCATTCTCAATTTGCCTAT
AAAGATAGAGTTAAAAAAGAGGATGAGATTTTTACTTTGGAAGAGATGAGAAAAAGTCAAAATAAACCTTATGTTATTGT
TGCCACTCAAGTGATTGAAATTTCTCTTGATATGTCCGTCGATGTTATGTATTCTGAACTATCTCCACCAGATGCACTTG
GGCAGAGGGCTGGAAGATTGCACAGAAAAGGAAAAGATTGGAGAGAAAATGGAAAAGAATACAAGCTAAAAATATTTTTG
CCGTATAAACACTTGCCATATAGCAAGGAACTAATAGAAAAAACAATTAATCATATAAAATTCTATGAAAAACCTTTGGA
TTATAGAGATATTAAAGATTTCGTTGATAATGTTTATAAAGATTATAATTTAAGCATTCCAAGTGATTTAAAGTTATTTT
TTGATGAGGCAATATTATTTGGAAGGCATTGGACAGATATATCAACAATAGATGAAGAAGGAAGATTCTTTAAAGTTAGA
GATGATAAGTTTATGAAGATTGAAGTAGTTCCTCAAGTTTATTTTGATGAATTGGGAGAAAATTCCTTAAGAGCAGAGTA
TATGGCAAAAATCCCAGCCTATTTAATTTTAAATGAAATGAAAAATGAGGAGGGATTAATTCACTTTTACCCTTATGAAA
AAAGAGTTGGTAGAAAAACCAGAAGATATTTAATTTGTTCATTTAAATATACTTATGAAATAGGATTTGACTACAAAGAG
GAAGAGGAGTTTGAAGACATCTTATAG

Upstream 100 bases:

>100_bases
AATTAAATTTGTTAAAAAGTCATATCTAAACTGGTGAAGATATGCTCACTATACCTCTTGATAATTTTATAAAACAAAGA
ATACTTTTTTTACCATTTAT

Downstream 100 bases:

>100_bases
GTGGAATTATGGAAAATTATTTGGAAGAAGAGCTTATAATTGGAGGTATTGAGATAAACTATCTCTATGTATGTAAGACA
AAGCTTTGGTATTTTGTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 728

Protein sequence:

>728_residues
MHDIGKITEGFQNNIKKGKRSNKHPHPLYALPIIKNIEFDYLFDIPIEVFAILSHHTQLYNNLYADYQQYKKGTFLIEEI
KEFIKNSKEAYESLGFSKFFEFEDLKIEDIPKDAKPLELHRLRRKYWIEANNYIKSLSFDDKIKIKSIFSFMFSILQLCD
DFASLNFSEYAKDREGIFDDVLENPEIYVPTLNIDNPISFILKDYEPYKFQKELYNSKNKFVMLFAPCGRGKTEGALLWA
LNALKNFKRNKIILAMPTQVTSNAMYDRLVKIFGEENVGLFHGKSFIKLRDSKEIEDEDDLEEIRDENFKGNVFFKPITI
TTIDHVIYSFVHGFSQADFALGNIQNSVIIFDEVHYYEKYTLEHLLTLFDILRRMDIPHLLMSGTLPNFLMNNLEGYELV
VDEEGLNYKPFKLKCSENHLIWKEDDEWKVNENIINEIIENYKKGLSQAIILNTVERAREFYKAVRDKVPAILYHSQFAY
KDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVDVMYSELSPPDALGQRAGRLHRKGKDWRENGKEYKLKIFL
PYKHLPYSKELIEKTINHIKFYEKPLDYRDIKDFVDNVYKDYNLSIPSDLKLFFDEAILFGRHWTDISTIDEEGRFFKVR
DDKFMKIEVVPQVYFDELGENSLRAEYMAKIPAYLILNEMKNEEGLIHFYPYEKRVGRKTRRYLICSFKYTYEIGFDYKE
EEEFEDIL

Sequences:

>Translated_728_residues
MHDIGKITEGFQNNIKKGKRSNKHPHPLYALPIIKNIEFDYLFDIPIEVFAILSHHTQLYNNLYADYQQYKKGTFLIEEI
KEFIKNSKEAYESLGFSKFFEFEDLKIEDIPKDAKPLELHRLRRKYWIEANNYIKSLSFDDKIKIKSIFSFMFSILQLCD
DFASLNFSEYAKDREGIFDDVLENPEIYVPTLNIDNPISFILKDYEPYKFQKELYNSKNKFVMLFAPCGRGKTEGALLWA
LNALKNFKRNKIILAMPTQVTSNAMYDRLVKIFGEENVGLFHGKSFIKLRDSKEIEDEDDLEEIRDENFKGNVFFKPITI
TTIDHVIYSFVHGFSQADFALGNIQNSVIIFDEVHYYEKYTLEHLLTLFDILRRMDIPHLLMSGTLPNFLMNNLEGYELV
VDEEGLNYKPFKLKCSENHLIWKEDDEWKVNENIINEIIENYKKGLSQAIILNTVERAREFYKAVRDKVPAILYHSQFAY
KDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVDVMYSELSPPDALGQRAGRLHRKGKDWRENGKEYKLKIFL
PYKHLPYSKELIEKTINHIKFYEKPLDYRDIKDFVDNVYKDYNLSIPSDLKLFFDEAILFGRHWTDISTIDEEGRFFKVR
DDKFMKIEVVPQVYFDELGENSLRAEYMAKIPAYLILNEMKNEEGLIHFYPYEKRVGRKTRRYLICSFKYTYEIGFDYKE
EEEFEDIL
>Mature_728_residues
MHDIGKITEGFQNNIKKGKRSNKHPHPLYALPIIKNIEFDYLFDIPIEVFAILSHHTQLYNNLYADYQQYKKGTFLIEEI
KEFIKNSKEAYESLGFSKFFEFEDLKIEDIPKDAKPLELHRLRRKYWIEANNYIKSLSFDDKIKIKSIFSFMFSILQLCD
DFASLNFSEYAKDREGIFDDVLENPEIYVPTLNIDNPISFILKDYEPYKFQKELYNSKNKFVMLFAPCGRGKTEGALLWA
LNALKNFKRNKIILAMPTQVTSNAMYDRLVKIFGEENVGLFHGKSFIKLRDSKEIEDEDDLEEIRDENFKGNVFFKPITI
TTIDHVIYSFVHGFSQADFALGNIQNSVIIFDEVHYYEKYTLEHLLTLFDILRRMDIPHLLMSGTLPNFLMNNLEGYELV
VDEEGLNYKPFKLKCSENHLIWKEDDEWKVNENIINEIIENYKKGLSQAIILNTVERAREFYKAVRDKVPAILYHSQFAY
KDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVDVMYSELSPPDALGQRAGRLHRKGKDWRENGKEYKLKIFL
PYKHLPYSKELIEKTINHIKFYEKPLDYRDIKDFVDNVYKDYNLSIPSDLKLFFDEAILFGRHWTDISTIDEEGRFFKVR
DDKFMKIEVVPQVYFDELGENSLRAEYMAKIPAYLILNEMKNEEGLIHFYPYEKRVGRKTRRYLICSFKYTYEIGFDYKE
EEEFEDIL

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain

Homologues:

Organism=Escherichia coli, GI1789119, Length=619, Percent_Identity=23.7479806138934, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y376_METJA (Q57821)

Other databases:

- EMBL:   L77117
- PIR:   H64346
- RefSeq:   NP_247350.1
- ProteinModelPortal:   Q57821
- GeneID:   1451233
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0376
- NMPDR:   fig|243232.1.peg.387
- TIGR:   MJ0376
- OMA:   DATETIL
- ProtClustDB:   CLSK2517602
- BioCyc:   MJAN243232:MJ_0376-MONOMER
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021
- SMART:   SM00487
- SMART:   SM00490
- TIGRFAMs:   TIGR01587

Pfam domain/function: PF00270 DEAD

EC number: NA

Molecular weight: Translated: 86468; Mature: 86468

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS51192 HELICASE_ATP_BIND_1; PS51194 HELICASE_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDIGKITEGFQNNIKKGKRSNKHPHPLYALPIIKNIEFDYLFDIPIEVFAILSHHTQLY
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCEEEEECCHHHHHHHHHHHHHHH
NNLYADYQQYKKGTFLIEEIKEFIKNSKEAYESLGFSKFFEFEDLKIEDIPKDAKPLELH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHH
RLRRKYWIEANNYIKSLSFDDKIKIKSIFSFMFSILQLCDDFASLNFSEYAKDREGIFDD
HHHHHHEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
VLENPEIYVPTLNIDNPISFILKDYEPYKFQKELYNSKNKFVMLFAPCGRGKTEGALLWA
HHCCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHH
LNALKNFKRNKIILAMPTQVTSNAMYDRLVKIFGEENVGLFHGKSFIKLRDSKEIEDEDD
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCHH
LEEIRDENFKGNVFFKPITITTIDHVIYSFVHGFSQADFALGNIQNSVIIFDEVHYYEKY
HHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEECHHHHHHH
TLEHLLTLFDILRRMDIPHLLMSGTLPNFLMNNLEGYELVVDEEGLNYKPFKLKCSENHL
HHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCE
IWKEDDEWKVNENIINEIIENYKKGLSQAIILNTVERAREFYKAVRDKVPAILYHSQFAY
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHH
KDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVDVMYSELSPPDALGQRAGRL
HHHCCCCCCEEEHHHHHHHCCCCEEEEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHH
HRKGKDWRENGKEYKLKIFLPYKHLPYSKELIEKTINHIKFYEKPLDYRDIKDFVDNVYK
HHCCCCHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DYNLSIPSDLKLFFDEAILFGRHWTDISTIDEEGRFFKVRDDKFMKIEVVPQVYFDELGE
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEEECHHHHHHHCCC
NSLRAEYMAKIPAYLILNEMKNEEGLIHFYPYEKRVGRKTRRYLICSFKYTYEIGFDYKE
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCEEEEEEEEEEEEECCCCCC
EEEFEDIL
HHHHHHCC
>Mature Secondary Structure
MHDIGKITEGFQNNIKKGKRSNKHPHPLYALPIIKNIEFDYLFDIPIEVFAILSHHTQLY
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCEEEEECCHHHHHHHHHHHHHHH
NNLYADYQQYKKGTFLIEEIKEFIKNSKEAYESLGFSKFFEFEDLKIEDIPKDAKPLELH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHH
RLRRKYWIEANNYIKSLSFDDKIKIKSIFSFMFSILQLCDDFASLNFSEYAKDREGIFDD
HHHHHHEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
VLENPEIYVPTLNIDNPISFILKDYEPYKFQKELYNSKNKFVMLFAPCGRGKTEGALLWA
HHCCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHH
LNALKNFKRNKIILAMPTQVTSNAMYDRLVKIFGEENVGLFHGKSFIKLRDSKEIEDEDD
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCHH
LEEIRDENFKGNVFFKPITITTIDHVIYSFVHGFSQADFALGNIQNSVIIFDEVHYYEKY
HHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEECHHHHHHH
TLEHLLTLFDILRRMDIPHLLMSGTLPNFLMNNLEGYELVVDEEGLNYKPFKLKCSENHL
HHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCE
IWKEDDEWKVNENIINEIIENYKKGLSQAIILNTVERAREFYKAVRDKVPAILYHSQFAY
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHH
KDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVDVMYSELSPPDALGQRAGRL
HHHCCCCCCEEEHHHHHHHCCCCEEEEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHH
HRKGKDWRENGKEYKLKIFLPYKHLPYSKELIEKTINHIKFYEKPLDYRDIKDFVDNVYK
HHCCCCHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DYNLSIPSDLKLFFDEAILFGRHWTDISTIDEEGRFFKVRDDKFMKIEVVPQVYFDELGE
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEEECHHHHHHHCCC
NSLRAEYMAKIPAYLILNEMKNEEGLIHFYPYEKRVGRKTRRYLICSFKYTYEIGFDYKE
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCEEEEEEEEEEEEECCCCCC
EEEFEDIL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087