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The map label for this gene is selB [C]

Identifier: 15668499

GI number: 15668499

Start: 301166

End: 302092

Strand: Reverse

Name: selB [C]

Synonym: MJ0325

Alternate gene names: 15668499

Gene position: 302092-301166 (Counterclockwise)

Preceding gene: 15668502

Following gene: 15668498

Centisome position: 18.14

GC content: 32.69

Gene sequence:

>927_bases
ATGGAAGGTTTGACAGTAGGGTTATTTGGACATGTTGAAGGTGTTGGAAAAGAATTAGGGAAGAAAGGAACTTCAACAGA
CATAACTTTATATAATTACAAACAGGGAGATAAGGCAGTTTGTTATGTAGAGCCAACAAGATATCCAGATAGAATAAACC
CTTTAATATATGAAATAAACATGATGGACTATGCCTTAGTTTTTATTGATGAGATTACAGGAGAGTTAGGAGAGACACTT
TTAGCATTGGATATGTTTGGAATAAATAATGGAGCTTTTGTTGTTGGTGAATATGTTGATTTAGACATGTTGAAAAATAT
AATATCCCAAACATCAATGAAGGACTTTGAAATCTTAGAGAGAGATTTTATAAACATTAGGGAAAAGATGATTAATTTAA
ATATTGAGAGAGATTATAACGGCTTTGTTAAAATTCCAATAGACCACTACTTTACTGTTAGAAGTGTTGGAACTGTTATA
TTAGGAAAGGTTGAGAGTGGAACTGTAAGAGTTCATGACAATTTGAGGGTCTATCCAACAGATAAAATGGCAATGGTTAG
GAGCATTCAAATCCATGATAATGATTTTAAAGAGGCAAAAGCTGGGAATAGAGTAGGTTTAGCTTTAAAAGGAATAACTA
CAGATGAGTTAGATAGAGGAATGATACTATCAAATGGAGAGTTAAAAGTTGCTAAAGAGATTGAAATCAACATTAACTGG
AACCCATTCATGCAAAAAACTGTAAAGGAAGGGGAGAACTACCAAATAATTGTTGGTTTGCAAAGTGTTTCATGTGTTGT
TGAGGAAGTGAATAAAAACAAAATAAAGCTTTCACTGCAAAAAGAAATAGCTTACGATGTTGGAGATAAGCTATGTTTAA
TTGATGGCAGTGCAAAAATTAGGATATTGGGTGTCGGAAAATTATAG

Upstream 100 bases:

>100_bases
ATCTTCAATTAATATAAAATAATAAGGTTATAGTTAGCTCTTAAATAGTTAATTCTTTAGAGAGAATAATTGGGCTACTA
AAAAATATTATGGTGATTAA

Downstream 100 bases:

>100_bases
TTCTTTTCAAAATATTTTTGCAATAACTAAGCACTGATGAACTCCTTCCTTTAGGAAGGAGTTCAAATTTCCTTAATAAC
TTTTATTAACTTTTAAAAAG

Product: translation factor EF-1 alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MEGLTVGLFGHVEGVGKELGKKGTSTDITLYNYKQGDKAVCYVEPTRYPDRINPLIYEINMMDYALVFIDEITGELGETL
LALDMFGINNGAFVVGEYVDLDMLKNIISQTSMKDFEILERDFINIREKMINLNIERDYNGFVKIPIDHYFTVRSVGTVI
LGKVESGTVRVHDNLRVYPTDKMAMVRSIQIHDNDFKEAKAGNRVGLALKGITTDELDRGMILSNGELKVAKEIEININW
NPFMQKTVKEGENYQIIVGLQSVSCVVEEVNKNKIKLSLQKEIAYDVGDKLCLIDGSAKIRILGVGKL

Sequences:

>Translated_308_residues
MEGLTVGLFGHVEGVGKELGKKGTSTDITLYNYKQGDKAVCYVEPTRYPDRINPLIYEINMMDYALVFIDEITGELGETL
LALDMFGINNGAFVVGEYVDLDMLKNIISQTSMKDFEILERDFINIREKMINLNIERDYNGFVKIPIDHYFTVRSVGTVI
LGKVESGTVRVHDNLRVYPTDKMAMVRSIQIHDNDFKEAKAGNRVGLALKGITTDELDRGMILSNGELKVAKEIEININW
NPFMQKTVKEGENYQIIVGLQSVSCVVEEVNKNKIKLSLQKEIAYDVGDKLCLIDGSAKIRILGVGKL
>Mature_308_residues
MEGLTVGLFGHVEGVGKELGKKGTSTDITLYNYKQGDKAVCYVEPTRYPDRINPLIYEINMMDYALVFIDEITGELGETL
LALDMFGINNGAFVVGEYVDLDMLKNIISQTSMKDFEILERDFINIREKMINLNIERDYNGFVKIPIDHYFTVRSVGTVI
LGKVESGTVRVHDNLRVYPTDKMAMVRSIQIHDNDFKEAKAGNRVGLALKGITTDELDRGMILSNGELKVAKEIEININW
NPFMQKTVKEGENYQIIVGLQSVSCVVEEVNKNKIKLSLQKEIAYDVGDKLCLIDGSAKIRILGVGKL

Specific function: Translation Factor Necessary For The Incorporation Of Selenocysteine Into Proteins. It Probably Replaces Ef-Tu For The Insertion Of Selenocysteine Directed By The Uga Codon. Selb Binds GTP And GDP. [C]

COG id: COG3276

COG function: function code J; Selenocysteine-specific translation elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y325_METJA (Q57771)

Other databases:

- EMBL:   L77117
- PIR:   E64340
- RefSeq:   NP_247297.1
- ProteinModelPortal:   Q57771
- SMR:   Q57771
- GeneID:   1451179
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0325
- NMPDR:   fig|243232.1.peg.334
- TIGR:   MJ0325
- HOGENOM:   HBG733210
- OMA:   PTRYPER
- ProtClustDB:   CLSK876159
- BioCyc:   MJAN243232:MJ_0325-MONOMER
- InterPro:   IPR004161
- InterPro:   IPR009000

Pfam domain/function: PF03144 GTP_EFTU_D2; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 34598; Mature: 34598

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGLTVGLFGHVEGVGKELGKKGTSTDITLYNYKQGDKAVCYVEPTRYPDRINPLIYEIN
CCCEEEEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEE
MMDYALVFIDEITGELGETLLALDMFGINNGAFVVGEYVDLDMLKNIISQTSMKDFEILE
HHHEEEEHHHHHHHHHHHHEEEEEEEECCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHH
RDFINIREKMINLNIERDYNGFVKIPIDHYFTVRSVGTVILGKVESGTVRVHDNLRVYPT
HHHHHHHHHHEEEEEEECCCCEEEEEHHHEEEHHHCCEEEEEEECCCEEEEECCEEEEEC
DKMAMVRSIQIHDNDFKEAKAGNRVGLALKGITTDELDRGMILSNGELKVAKEIEININW
CCEEEEEEEEECCCCHHHHCCCCEEEEEEECCCHHHCCCCEEEECCCEEEEEEEEEEECC
NPFMQKTVKEGENYQIIVGLQSVSCVVEEVNKNKIKLSLQKEIAYDVGDKLCLIDGSAKI
CHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCEEEEEEEEHHHHCCCCEEEEEECCCEE
RILGVGKL
EEEEECCC
>Mature Secondary Structure
MEGLTVGLFGHVEGVGKELGKKGTSTDITLYNYKQGDKAVCYVEPTRYPDRINPLIYEIN
CCCEEEEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEE
MMDYALVFIDEITGELGETLLALDMFGINNGAFVVGEYVDLDMLKNIISQTSMKDFEILE
HHHEEEEHHHHHHHHHHHHEEEEEEEECCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHH
RDFINIREKMINLNIERDYNGFVKIPIDHYFTVRSVGTVILGKVESGTVRVHDNLRVYPT
HHHHHHHHHHEEEEEEECCCCEEEEEHHHEEEHHHCCEEEEEEECCCEEEEECCEEEEEC
DKMAMVRSIQIHDNDFKEAKAGNRVGLALKGITTDELDRGMILSNGELKVAKEIEININW
CCEEEEEEEEECCCCHHHHCCCCEEEEEEECCCHHHCCCCEEEECCCEEEEEEEEEEECC
NPFMQKTVKEGENYQIIVGLQSVSCVVEEVNKNKIKLSLQKEIAYDVGDKLCLIDGSAKI
CHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCEEEEEEEEHHHHCCCCEEEEEECCCEE
RILGVGKL
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087