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The map label for this gene is rpoK

Identifier: 15668369

GI number: 15668369

Start: 190941

End: 191114

Strand: Direct

Name: rpoK

Synonym: MJ0197

Alternate gene names: 15668369

Gene position: 190941-191114 (Clockwise)

Preceding gene: 15668368

Following gene: 15668370

Centisome position: 11.47

GC content: 31.61

Gene sequence:

>174_bases
TTGAAATTAACAAAATTTGAGATTGCAAGGATATTGGGAGCGAGAAGTTTGCAGATATCAAGTGGAGCATATGCAACAAT
AGAAACAAAATGTGATAGCTCATTGAAAATAGCTTATGAAGAAATTAAACAAGGAAAAGTTCCTTTAAAACCAATAAGAC
CGGTAAAAGCTTAA

Upstream 100 bases:

>100_bases
GGGTAGCCTGGATATCCTGTGCGCTTGGGGGGCGTGCGACCCGGGTTCAAGTCCCGGCGGCCCCACCATTTGATATTTTA
TATATTTCAGAGGTGAGATA

Downstream 100 bases:

>100_bases
TTGTTTTTAACTACAGTGGGGCTGAACGTAGTGAAGCTCCACTCTGAGGTATAGTAATCGCCCATGGGCGAGTAATGAAA
CCGAAGCGTAGCTTCGAGCT

Product: DNA-directed RNA polymerase subunit K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 57; Mature: 57

Protein sequence:

>57_residues
MKLTKFEIARILGARSLQISSGAYATIETKCDSSLKIAYEEIKQGKVPLKPIRPVKA

Sequences:

>Translated_57_residues
MKLTKFEIARILGARSLQISSGAYATIETKCDSSLKIAYEEIKQGKVPLKPIRPVKA
>Mature_57_residues
MKLTKFEIARILGARSLQISSGAYATIETKCDSSLKIAYEEIKQGKVPLKPIRPVKA

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOK_METJA (Q57650)

Other databases:

- EMBL:   L77117
- PIR:   F64324
- RefSeq:   NP_247165.1
- ProteinModelPortal:   Q57650
- SMR:   Q57650
- GeneID:   1451046
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0197
- NMPDR:   fig|243232.1.peg.202
- TIGR:   MJ0197
- HOGENOM:   HBG646526
- OMA:   SLQISDG
- ProtClustDB:   PRK01099
- BioCyc:   MJAN243232:MJ_0197-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00192
- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- PANTHER:   PTHR10773

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 6292; Mature: 6292

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTKFEIARILGARSLQISSGAYATIETKCDSSLKIAYEEIKQGKVPLKPIRPVKA
CCCCHHHHHHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLTKFEIARILGARSLQISSGAYATIETKCDSSLKIAYEEIKQGKVPLKPIRPVKA
CCCCHHHHHHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087