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The map label for this gene is rpoN

Identifier: 15668368

GI number: 15668368

Start: 190579

End: 190800

Strand: Direct

Name: rpoN

Synonym: MJ0196

Alternate gene names: 15668368

Gene position: 190579-190800 (Clockwise)

Preceding gene: 15668367

Following gene: 15668369

Centisome position: 11.45

GC content: 31.53

Gene sequence:

>222_bases
ATGATGTTCCCTATTAGATGTTTTTCCTGTGGTAATGTTATCGCTGAAGTTTTTGAAGAGTACAAAGAGAGAATTTTAAA
AGGAGAGAATCCAAAAGATGTTTTGGATGATTTAGGCATTAAAAAATACTGCTGTAGAAGAATGTTTATCTCTTACAGAA
TAGGAGAGGATGGAAGAGAAATTATTGATGAAATAATAGCTCATGACGAGAGATATCTATAA

Upstream 100 bases:

>100_bases
AACAAAGGGTCCAAGAGCAAAGAGACAAAAGTCATACAGATAAATTTATTTTACAATTTTTGGAAAGATATTATCTTTTC
TTTTATTTTGGGTGAGAAAC

Downstream 100 bases:

>100_bases
TTAGATTTTTAAACTTATTATTCTTTTTAACGGGGCCGTGGGGTAGCCTGGATATCCTGTGCGCTTGGGGGGCGTGCGAC
CCGGGTTCAAGTCCCGGCGG

Product: DNA-directed RNA polymerase subunit N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISYRIGEDGREIIDEIIAHDERYL

Sequences:

>Translated_73_residues
MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISYRIGEDGREIIDEIIAHDERYL
>Mature_73_residues
MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISYRIGEDGREIIDEIIAHDERYL

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1644

COG function: function code K; DNA-directed RNA polymerase, subunit N (RpoN/RPB10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoN/eukaryotic RPB10 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPON_METJA (Q57649)

Other databases:

- EMBL:   L77117
- RefSeq:   NP_247164.1
- ProteinModelPortal:   Q57649
- SMR:   Q57649
- GeneID:   1451044
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0196
- NMPDR:   fig|243232.1.peg.201
- TIGR:   MJ0196
- HOGENOM:   HBG391971
- OMA:   KYCCRRM
- ProtClustDB:   PRK04016
- BioCyc:   MJAN243232:MJ_0196-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00250
- InterPro:   IPR012287
- InterPro:   IPR000268
- InterPro:   IPR020789
- Gene3D:   G3DSA:1.10.10.60
- PANTHER:   PTHR23413:SF2
- PIRSF:   PIRSF005653
- ProDom:   PD006539

Pfam domain/function: PF01194 RNA_pol_N; SSF46924 RNA_pol_N/8_sub

EC number: =2.7.7.6

Molecular weight: Translated: 8695; Mature: 8695

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS01112 RNA_POL_N_8KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
5.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISYRIGEDGRE
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
IIDEIIAHDERYL
HHHHHHHCCCCCC
>Mature Secondary Structure
MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISYRIGEDGRE
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
IIDEIIAHDERYL
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087