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The map label for this gene is tfx

Identifier: 15668345

GI number: 15668345

Start: 175868

End: 176341

Strand: Direct

Name: tfx

Synonym: MJ0173

Alternate gene names: NA

Gene position: 175868-176341 (Clockwise)

Preceding gene: 15668341

Following gene: 15668346

Centisome position: 10.56

GC content: 28.06

Gene sequence:

>474_bases
ATGTTTAATATAATGTTAATTATAAGAAATTACCACCAAAATAATTATTTGGTGTTATGCATGGTTGAGGATTCATTCTT
AACAGACACACAAATTAAGGTTTTAAAATTGAGAAAAAAAGGATTAACCCAAGAAGAAATAGCAAAAATGCTTGGAACAA
GTAGAGCCAACATAAGTATGATTGAAAAAAGGGCAAAAGAAAATATAAAGAAGGCATATAACACAATAAAGATTTATAAT
AGGATAATGGCTCCACTATCTATTGAAATTGAAGAAGGGACTGATGTTTTAGAAATTCCAGATATTGTATTTAAAAAAGC
TGATGAAGAAGGTATAAAAGTGAAATACAATACCTTAGAGCTCATTGAGCTTATAAAAGAAAATGCTTCAGAATTTATAG
AAAAAAGAACAGTTAAAAAGAAATTTAAAATATACATCCTTGAAAATGGGGACTTAGATGTTGGAGGGAGCTAA

Upstream 100 bases:

>100_bases
TATATACCCCTCCCTAATTAATTTCTCAATTACTGCTTTCTTTTGTTCTTCTAAATCCATAATTTCACCAAATATAATCT
ATATAAGGTAGCTTATATAA

Downstream 100 bases:

>100_bases
ATGAAAATTATAGAAGAAATTCCACAGAAAAATATTATTAAGCTTATGCCTGAAAACTTAGATGATTTATGGGTCTTATA
TAACATTATTGAAGAAGGAG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MFNIMLIIRNYHQNNYLVLCMVEDSFLTDTQIKVLKLRKKGLTQEEIAKMLGTSRANISMIEKRAKENIKKAYNTIKIYN
RIMAPLSIEIEEGTDVLEIPDIVFKKADEEGIKVKYNTLELIELIKENASEFIEKRTVKKKFKIYILENGDLDVGGS

Sequences:

>Translated_157_residues
MFNIMLIIRNYHQNNYLVLCMVEDSFLTDTQIKVLKLRKKGLTQEEIAKMLGTSRANISMIEKRAKENIKKAYNTIKIYN
RIMAPLSIEIEEGTDVLEIPDIVFKKADEEGIKVKYNTLELIELIKENASEFIEKRTVKKKFKIYILENGDLDVGGS
>Mature_157_residues
MFNIMLIIRNYHQNNYLVLCMVEDSFLTDTQIKVLKLRKKGLTQEEIAKMLGTSRANISMIEKRAKENIKKAYNTIKIYN
RIMAPLSIEIEEGTDVLEIPDIVFKKADEEGIKVKYNTLELIELIKENASEFIEKRTVKKKFKIYILENGDLDVGGS

Specific function: Putative transcriptional regulator [H]

COG id: COG1356

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfx family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR007630
- InterPro:   IPR004645
- InterPro:   IPR018384 [H]

Pfam domain/function: PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 18191; Mature: 18191

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNIMLIIRNYHQNNYLVLCMVEDSFLTDTQIKVLKLRKKGLTQEEIAKMLGTSRANISM
CEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
IEKRAKENIKKAYNTIKIYNRIMAPLSIEIEEGTDVLEIPDIVFKKADEEGIKVKYNTLE
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCHHHHHCCCCCCCEEEEHHHH
LIELIKENASEFIEKRTVKKKFKIYILENGDLDVGGS
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MFNIMLIIRNYHQNNYLVLCMVEDSFLTDTQIKVLKLRKKGLTQEEIAKMLGTSRANISM
CEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
IEKRAKENIKKAYNTIKIYNRIMAPLSIEIEEGTDVLEIPDIVFKKADEEGIKVKYNTLE
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCHHHHHCCCCCCCEEEEHHHH
LIELIKENASEFIEKRTVKKKFKIYILENGDLDVGGS
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]