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The map label for this gene is fdhB

Identifier: 15668177

GI number: 15668177

Start: 6111

End: 7250

Strand: Reverse

Name: fdhB

Synonym: MJ0005

Alternate gene names: 15668177

Gene position: 7250-6111 (Counterclockwise)

Preceding gene: 15668178

Following gene: 15668174

Centisome position: 0.44

GC content: 35.18

Gene sequence:

>1140_bases
ATGAAATACGTTTTAATTCAAGCTACAGACAATGGGATTTTGAGGAGGGCTGAGTGTGGTGGTGCTGTTACAGCCTTATT
TAAATATCTATTAGATAAAAAGCTTGTTGACGGCGTTTTAGCTTTAAAGAGAGGAGAAGATGTTTATGATGGAATTCCAA
CATTTATAACGAATTCTAATGAGTTGGTTGAGACTGCTGGTTCTTTACACTGTGCTCCTACAAACTTTGGAAAGTTGATT
GCAAAATACTTAGCAGACAAAAAGATTGCCGTTCCTGCAAAGCCATGTGATGCAATGGCTATTAGAGAATTGGCAAAATT
AAATCAAATAAACTTAGACAATGTTTATATGATTGGTTTGAATTGTGGAGGAACGATAAGTCCAATAACAGCCATGAAGA
TGATTGAATTATTTTATGAAGTTAATCCATTAGATGTTGTTAAGGAAGAGATTGATAAGGGTAAGTTTATTATCGAATTA
AAGAATGGGGAGCATAAGGCTGTAAAAATAGAAGAATTGGAGGAGAAAGGCTTTGGTAGGAGGAAAAATTGCCAAAGATG
CGAAATAATGATTCCAAGGATGGCAGATTTAGCCTGCGGGAATTGGGGGGCTGAAAAGGGTTGGACATTTGTTGAAATCT
GTTCAGAGAGAGGGAGAAAATTAGTTGAAGATGCTGAGAAAGATGGTTATATTAAAATTAAACAACCTTCAGAGAAGGCA
ATACAAGTTAGGGAGAAAATTGAAAGTATAATGATAAAGTTGGCTAAAAAATTCCAAAAGAAGCATTTAGAGGAAGAGTA
TCCAAGCTTAGAAAAATGGAAAAAATATTGGAATCGATGTATAAAATGCTACGGTTGTAGGGATAACTGCCCTTTATGTT
TCTGTGTTGAATGTAGTTTAGAAAAAGATTACATTGAAGAAAAAGGTAAAATCCCACCAAATCCATTAATATTCCAAGGG
ATTAGATTGAGCCATATATCCCAAAGTTGTATAAACTGTGGGCAGTGTGAAGATGCATGCCCAATGGATATTCCTTTAGC
TTACATATTCCATAGAATGCAGCTAAAAATAAGAGACACATTAGGCTATATCCCGGGAGTAGATAACAGTTTGCCACCAC
TATTTAATATTGAGAGGTAA

Upstream 100 bases:

>100_bases
TAAACTTCTATAAGGAAATTGACGCTTTTAGGCATCTAAATACCTTGAGGATATATAAACTGTGAAAGTCCTGTTTAAAA
GAAATAACTAAGGTGATATC

Downstream 100 bases:

>100_bases
ATTAAACCAATATAGCTCCAACACAGCAAACAATCTGTGGTTCTTTTGGAATTAGTAGTTTTTTATTCAATTTTTTCTCA
AACATCTCAACCAAAACCTT

Product: formate dehydrogenase subunit beta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKYVLIQATDNGILRRAECGGAVTALFKYLLDKKLVDGVLALKRGEDVYDGIPTFITNSNELVETAGSLHCAPTNFGKLI
AKYLADKKIAVPAKPCDAMAIRELAKLNQINLDNVYMIGLNCGGTISPITAMKMIELFYEVNPLDVVKEEIDKGKFIIEL
KNGEHKAVKIEELEEKGFGRRKNCQRCEIMIPRMADLACGNWGAEKGWTFVEICSERGRKLVEDAEKDGYIKIKQPSEKA
IQVREKIESIMIKLAKKFQKKHLEEEYPSLEKWKKYWNRCIKCYGCRDNCPLCFCVECSLEKDYIEEKGKIPPNPLIFQG
IRLSHISQSCINCGQCEDACPMDIPLAYIFHRMQLKIRDTLGYIPGVDNSLPPLFNIER

Sequences:

>Translated_379_residues
MKYVLIQATDNGILRRAECGGAVTALFKYLLDKKLVDGVLALKRGEDVYDGIPTFITNSNELVETAGSLHCAPTNFGKLI
AKYLADKKIAVPAKPCDAMAIRELAKLNQINLDNVYMIGLNCGGTISPITAMKMIELFYEVNPLDVVKEEIDKGKFIIEL
KNGEHKAVKIEELEEKGFGRRKNCQRCEIMIPRMADLACGNWGAEKGWTFVEICSERGRKLVEDAEKDGYIKIKQPSEKA
IQVREKIESIMIKLAKKFQKKHLEEEYPSLEKWKKYWNRCIKCYGCRDNCPLCFCVECSLEKDYIEEKGKIPPNPLIFQG
IRLSHISQSCINCGQCEDACPMDIPLAYIFHRMQLKIRDTLGYIPGVDNSLPPLFNIER
>Mature_379_residues
MKYVLIQATDNGILRRAECGGAVTALFKYLLDKKLVDGVLALKRGEDVYDGIPTFITNSNELVETAGSLHCAPTNFGKLI
AKYLADKKIAVPAKPCDAMAIRELAKLNQINLDNVYMIGLNCGGTISPITAMKMIELFYEVNPLDVVKEEIDKGKFIIEL
KNGEHKAVKIEELEEKGFGRRKNCQRCEIMIPRMADLACGNWGAEKGWTFVEICSERGRKLVEDAEKDGYIKIKQPSEKA
IQVREKIESIMIKLAKKFQKKHLEEEYPSLEKWKKYWNRCIKCYGCRDNCPLCFCVECSLEKDYIEEKGKIPPNPLIFQG
IRLSHISQSCINCGQCEDACPMDIPLAYIFHRMQLKIRDTLGYIPGVDNSLPPLFNIER

Specific function: Catalyzes the oxidation of formate

COG id: COG1035

COG function: function code C; Coenzyme F420-reducing hydrogenase, beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHB_METJA (Q60316)

Other databases:

- EMBL:   L77117
- PIR:   E64300
- RefSeq:   NP_246968.1
- ProteinModelPortal:   Q60316
- GeneID:   1450844
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0005
- NMPDR:   fig|243232.1.peg.5
- TIGR:   MJ0005
- HOGENOM:   HBG539534
- OMA:   ACGNWGA
- ProtClustDB:   CLSK876031
- BioCyc:   MJAN243232:MJ_0005-MONOMER
- BRENDA:   1.2.1.2
- GO:   GO:0006810
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR007516
- InterPro:   IPR007525
- InterPro:   IPR012285
- InterPro:   IPR009051
- Gene3D:   G3DSA:1.10.1060.10

Pfam domain/function: PF04432 FrhB_FdhB_C; PF04422 FrhB_FdhB_N; SSF46548 Helical_ferredxn

EC number: =1.2.1.2

Molecular weight: Translated: 43015; Mature: 43015

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVLIQATDNGILRRAECGGAVTALFKYLLDKKLVDGVLALKRGEDVYDGIPTFITNSN
CCEEEEEECCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEECCCH
ELVETAGSLHCAPTNFGKLIAKYLADKKIAVPAKPCDAMAIRELAKLNQINLDNVYMIGL
HHHHHCCCEEECCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
NCGGTISPITAMKMIELFYEVNPLDVVKEEIDKGKFIIELKNGEHKAVKIEELEEKGFGR
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHHHCCCCC
RKNCQRCEIMIPRMADLACGNWGAEKGWTFVEICSERGRKLVEDAEKDGYIKIKQPSEKA
CCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHCCCCCEEEEECCHHHH
IQVREKIESIMIKLAKKFQKKHLEEEYPSLEKWKKYWNRCIKCYGCRDNCPLCFCVECSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCCCEEEEEEECC
EKDYIEEKGKIPPNPLIFQGIRLSHISQSCINCGQCEDACPMDIPLAYIFHRMQLKIRDT
CHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LGYIPGVDNSLPPLFNIER
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKYVLIQATDNGILRRAECGGAVTALFKYLLDKKLVDGVLALKRGEDVYDGIPTFITNSN
CCEEEEEECCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEECCCH
ELVETAGSLHCAPTNFGKLIAKYLADKKIAVPAKPCDAMAIRELAKLNQINLDNVYMIGL
HHHHHCCCEEECCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
NCGGTISPITAMKMIELFYEVNPLDVVKEEIDKGKFIIELKNGEHKAVKIEELEEKGFGR
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHHHCCCCC
RKNCQRCEIMIPRMADLACGNWGAEKGWTFVEICSERGRKLVEDAEKDGYIKIKQPSEKA
CCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHCCCCCEEEEECCHHHH
IQVREKIESIMIKLAKKFQKKHLEEEYPSLEKWKKYWNRCIKCYGCRDNCPLCFCVECSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCCCEEEEEEECC
EKDYIEEKGKIPPNPLIFQGIRLSHISQSCINCGQCEDACPMDIPLAYIFHRMQLKIRDT
CHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LGYIPGVDNSLPPLFNIER
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087