| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15646163
GI number: 15646163
Start: 1637996
End: 1639843
Strand: Reverse
Name: Not Available
Synonym: HP1556
Alternate gene names: 15646163
Gene position: 1639843-1637996 (Counterclockwise)
Preceding gene: 15646164
Following gene: 15646160
Centisome position: 98.32
GC content: 39.45
Gene sequence:
>1848_bases ATGGATAATAGGAATATTGATCCTTACTTCAACCCAGAGCAATTTTTAGAAACCCAAAAATACAAAGGCACGGTTACAGC ATTAATCTTTTTATTGCTTTTTTTTATTTTTTTAATGGTGGCTTTTAAAAAAGCTTTTTTTGCCCAAGCCAACATGCCTA ATCTAGTGATGAGCAAACAAGACACTGCGGCTAGGGGGACTATCTATAGTCAAGACAACTACAGCCTAGCCACTTCACAA ACCCTTTTCAAACTGGGCTTTGATACAAGGTTTTTAAACCCGGATAAAGAAGATTTTTTCATTGATTTCCTTTCTATTTA TAGCAATATCCCTAAAAAGTCCTTAAAAGACGCCATCAATACAAAAGGCTATATCATTCTAGCCTATGATCTCACGCCCA ATATGGCTGCTAATATTAGAGACTTAAATAAGAAATTTTTAGCCTTTGGGGTTTTTCAAAATTTCAAAGACGCGCACGAT AAGGTGTGGCAAAAGCAAGGGCTAAACATTGAAGTGAGCGGCGTTTCTAGGCATTACCCTTATCAAAATAGCCTAGAGCC AATCATTGGCTATGTGCAAAAACAAGAAGAAGACAAGCTCACTTTAACTACCGGTAAAAAAGGCGTTGAAAAATCTCAAG ATCACTTGCTTAAAGCCCAACAAAATGGCATAAGAACAGGCAAAAGAGACGTGAGTTTTAACTTTATCCAAAACCACTCT TATACAGAGGTTGAACGCCTTGATGGCTATGAGGTGTATTTGAGCGTTCCTTTAAAACTCCAAAGAGAAATTGAAACCCT ATTGGATAAAACTAAAGACAAACTCAAGGCTAAAGAAATCCTAGTGGGTATCATTAACCCTAAAAGCGGGGAAATTTTAT CGCTAGCTTCAAGCAAGCGCTTCAATCCTAATGCGATTAAAACCAGCGATTATGAAAGCTTGAATTTGAGCGTTGCTGAA AAGGTTTTTGAGCCAGGCAGCACGATCAAACCCATTGTTTATTCCTTGCTGTTAGACAAGAATTTGATCAACCCCAAAGA ACGCATTGATTTAAACCATGGCTATTACCAATTAGGAAAATACACCATTAAAGACGACTTTATCCCCAGTAAAAAAGCCG TTGTGGAAGACATTTTGATCCAATCTAGCAATGTGGGCATGATAAAAATCAGTAAAAACTTAAACCCAAAGGATTTCTAT AATGGGCTTTTAGGCTATGGATTTTCTCAAAAAACCGGCATTGATTTATCTCTAGAAGCCACAGGAAAGATCCCTCCTTT GTCCGCTTTCAAGCGTGAAGTGTTAAAGGGGAGCGTTTCTTATGGCTATGGGCTGAACGCGACTTTTTTGCAGCTTTTAA GGGCTTATGCGGTGTTTTCTAATGAAGGCAAATTGACTACCCCCTATTTAGTGCAACGAGAAACCGCCCCTAATGGCGAT ATTTACATCCCTAGCCCCAAACCCACCTTTCAAGTCATTAGCCCAAAAAGCGCTAGGAAAATGAAAGAAACCTTAATCAA AGTAGTGCGTTATGGCACAGGCAAAAACGCTCAATTTGAAGGGCTATACATAGGGGGCAAAACCGGCACGGCTAGGGTCG CTAAAAACGGGAGTTATAGCGCGCAGTCCTACAACAGCTCTTTTTTTGGGTTTGCTGAAGATGAAAGGCAGGTTTTTACT ATCGGCGTGGTTATCTTAGGTTCGCATGGCAAGGAAGAATATTACGCCAGCAAGATTGCAGCCCCCATTTTTAAAGAAAT CACCGAAATTTTAGTGCGTTACAATTATCTATCGCCCTCTATTGCGATTCAAAACGCGCTCGAGAAAAACCGCTTTAAGA TAAAATAA
Upstream 100 bases:
>100_bases TGTTGTTGCTACACCCCATTTTAACGGATTTTACCATCAAAAATTCATGCTCTCATGCGTTGTGAAAATCCAACGCCACG CCATTTTCAAGTAAGTGCTT
Downstream 100 bases:
>100_bases AAGGCTCTTTTCAACCCAAACTCCAAAAAAGGAGTCTTAAGTTGCCGGATCTGTGGCATTAAGGCCAAATTTAGAGGACA GATTAGAAAAAATCTGTTTA
Product: cell division protein (ftsI)
Products: NA
Alternate protein names: PBP-2B; Penicillin-binding protein B [H]
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MDNRNIDPYFNPEQFLETQKYKGTVTALIFLLLFFIFLMVAFKKAFFAQANMPNLVMSKQDTAARGTIYSQDNYSLATSQ TLFKLGFDTRFLNPDKEDFFIDFLSIYSNIPKKSLKDAINTKGYIILAYDLTPNMAANIRDLNKKFLAFGVFQNFKDAHD KVWQKQGLNIEVSGVSRHYPYQNSLEPIIGYVQKQEEDKLTLTTGKKGVEKSQDHLLKAQQNGIRTGKRDVSFNFIQNHS YTEVERLDGYEVYLSVPLKLQREIETLLDKTKDKLKAKEILVGIINPKSGEILSLASSKRFNPNAIKTSDYESLNLSVAE KVFEPGSTIKPIVYSLLLDKNLINPKERIDLNHGYYQLGKYTIKDDFIPSKKAVVEDILIQSSNVGMIKISKNLNPKDFY NGLLGYGFSQKTGIDLSLEATGKIPPLSAFKREVLKGSVSYGYGLNATFLQLLRAYAVFSNEGKLTTPYLVQRETAPNGD IYIPSPKPTFQVISPKSARKMKETLIKVVRYGTGKNAQFEGLYIGGKTGTARVAKNGSYSAQSYNSSFFGFAEDERQVFT IGVVILGSHGKEEYYASKIAAPIFKEITEILVRYNYLSPSIAIQNALEKNRFKIK
Sequences:
>Translated_615_residues MDNRNIDPYFNPEQFLETQKYKGTVTALIFLLLFFIFLMVAFKKAFFAQANMPNLVMSKQDTAARGTIYSQDNYSLATSQ TLFKLGFDTRFLNPDKEDFFIDFLSIYSNIPKKSLKDAINTKGYIILAYDLTPNMAANIRDLNKKFLAFGVFQNFKDAHD KVWQKQGLNIEVSGVSRHYPYQNSLEPIIGYVQKQEEDKLTLTTGKKGVEKSQDHLLKAQQNGIRTGKRDVSFNFIQNHS YTEVERLDGYEVYLSVPLKLQREIETLLDKTKDKLKAKEILVGIINPKSGEILSLASSKRFNPNAIKTSDYESLNLSVAE KVFEPGSTIKPIVYSLLLDKNLINPKERIDLNHGYYQLGKYTIKDDFIPSKKAVVEDILIQSSNVGMIKISKNLNPKDFY NGLLGYGFSQKTGIDLSLEATGKIPPLSAFKREVLKGSVSYGYGLNATFLQLLRAYAVFSNEGKLTTPYLVQRETAPNGD IYIPSPKPTFQVISPKSARKMKETLIKVVRYGTGKNAQFEGLYIGGKTGTARVAKNGSYSAQSYNSSFFGFAEDERQVFT IGVVILGSHGKEEYYASKIAAPIFKEITEILVRYNYLSPSIAIQNALEKNRFKIK >Mature_615_residues MDNRNIDPYFNPEQFLETQKYKGTVTALIFLLLFFIFLMVAFKKAFFAQANMPNLVMSKQDTAARGTIYSQDNYSLATSQ TLFKLGFDTRFLNPDKEDFFIDFLSIYSNIPKKSLKDAINTKGYIILAYDLTPNMAANIRDLNKKFLAFGVFQNFKDAHD KVWQKQGLNIEVSGVSRHYPYQNSLEPIIGYVQKQEEDKLTLTTGKKGVEKSQDHLLKAQQNGIRTGKRDVSFNFIQNHS YTEVERLDGYEVYLSVPLKLQREIETLLDKTKDKLKAKEILVGIINPKSGEILSLASSKRFNPNAIKTSDYESLNLSVAE KVFEPGSTIKPIVYSLLLDKNLINPKERIDLNHGYYQLGKYTIKDDFIPSKKAVVEDILIQSSNVGMIKISKNLNPKDFY NGLLGYGFSQKTGIDLSLEATGKIPPLSAFKREVLKGSVSYGYGLNATFLQLLRAYAVFSNEGKLTTPYLVQRETAPNGD IYIPSPKPTFQVISPKSARKMKETLIKVVRYGTGKNAQFEGLYIGGKTGTARVAKNGSYSAQSYNSSFFGFAEDERQVFT IGVVILGSHGKEEYYASKIAAPIFKEITEILVRYNYLSPSIAIQNALEKNRFKIK
Specific function: Penicillin-binding proteins (PBPs) function in the late steps of murein biosynthesis. PBP-2B is required for vegetative cell division and sporulation septation. Beta-lactamase inactivates the PBPs by acylating an essential serine residue in the active sit
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PASTA domains [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=600, Percent_Identity=25.5, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1786854, Length=478, Percent_Identity=25.7322175732218, Blast_Score=95, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 69440; Mature: 69440
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNRNIDPYFNPEQFLETQKYKGTVTALIFLLLFFIFLMVAFKKAFFAQANMPNLVMSKQ CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC DTAARGTIYSQDNYSLATSQTLFKLGFDTRFLNPDKEDFFIDFLSIYSNIPKKSLKDAIN CCHHCCEEEECCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHC TKGYIILAYDLTPNMAANIRDLNKKFLAFGVFQNFKDAHDKVWQKQGLNIEVSGVSRHYP CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC YQNSLEPIIGYVQKQEEDKLTLTTGKKGVEKSQDHLLKAQQNGIRTGKRDVSFNFIQNHS CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC YTEVERLDGYEVYLSVPLKLQREIETLLDKTKDKLKAKEILVGIINPKSGEILSLASSKR CCHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEECCCCC FNPNAIKTSDYESLNLSVAEKVFEPGSTIKPIVYSLLLDKNLINPKERIDLNHGYYQLGK CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHEECCCCEEEECC YTIKDDFIPSKKAVVEDILIQSSNVGMIKISKNLNPKDFYNGLLGYGFSQKTGIDLSLEA EEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEC TGKIPPLSAFKREVLKGSVSYGYGLNATFLQLLRAYAVFSNEGKLTTPYLVQRETAPNGD CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC IYIPSPKPTFQVISPKSARKMKETLIKVVRYGTGKNAQFEGLYIGGKTGTARVAKNGSYS EECCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCC AQSYNSSFFGFAEDERQVFTIGVVILGSHGKEEYYASKIAAPIFKEITEILVRYNYLSPS CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH IAIQNALEKNRFKIK HHHHHHHHCCCCCCC >Mature Secondary Structure MDNRNIDPYFNPEQFLETQKYKGTVTALIFLLLFFIFLMVAFKKAFFAQANMPNLVMSKQ CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC DTAARGTIYSQDNYSLATSQTLFKLGFDTRFLNPDKEDFFIDFLSIYSNIPKKSLKDAIN CCHHCCEEEECCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHC TKGYIILAYDLTPNMAANIRDLNKKFLAFGVFQNFKDAHDKVWQKQGLNIEVSGVSRHYP CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC YQNSLEPIIGYVQKQEEDKLTLTTGKKGVEKSQDHLLKAQQNGIRTGKRDVSFNFIQNHS CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC YTEVERLDGYEVYLSVPLKLQREIETLLDKTKDKLKAKEILVGIINPKSGEILSLASSKR CCHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEECCCCC FNPNAIKTSDYESLNLSVAEKVFEPGSTIKPIVYSLLLDKNLINPKERIDLNHGYYQLGK CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHEECCCCEEEECC YTIKDDFIPSKKAVVEDILIQSSNVGMIKISKNLNPKDFYNGLLGYGFSQKTGIDLSLEA EEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEC TGKIPPLSAFKREVLKGSVSYGYGLNATFLQLLRAYAVFSNEGKLTTPYLVQRETAPNGD CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC IYIPSPKPTFQVISPKSARKMKETLIKVVRYGTGKNAQFEGLYIGGKTGTARVAKNGSYS EECCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCC AQSYNSSFFGFAEDERQVFTIGVVILGSHGKEEYYASKIAAPIFKEITEILVRYNYLSPS CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH IAIQNALEKNRFKIK HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8244929; 9384377; 8289242 [H]