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Identifier: 15645865

GI number: 15645865

Start: 1326081

End: 1327127

Strand: Reverse

Name: Not Available

Synonym: HP1251

Alternate gene names: 15645865

Gene position: 1327127-1326081 (Counterclockwise)

Preceding gene: 15645866

Following gene: 15645864

Centisome position: 79.57

GC content: 40.78

Gene sequence:

>1047_bases
ATGATTGCTTACATTCTCAAACGCTTGCTTTTGATTATCCCTACTTTATTAGCTATCATGACCATTAATTTCTTTTTGAT
CCAATCGGCTCCTGGAGGCCCTATAGAGCAGATGATGGCTAAAATCAATAACACGCAGTCCAAAGAGATTCAAGGCGTTG
TTAAAGAGCGTTCGTATAGGGCGTCTCAAGGGTTGGAGAGCGATTTGTTAGAAAATTTAAAAAAACTCTATGGTTTTGAC
AAGCCCATAGGGGAGCGCTACCTTCTCATGCTCAAAAAATATCTGCAATTTGATTTTGGGGAGAGCTTTTATCGCCAGAT
TAAAGTGATAGATTTGATTAAGGAAAAATTGCCCGTATCCATTTCGTTAGGGCTTTTTAGCACGCTTTTGATTTATCTTA
TTTCTATCCCTTTAGGGATTTTCAAGGCCAAACGCAATAACGAGCCTTTAGACGTGTTAAGCAGCGTGGTGATCATTGTC
GCTAACGCTATCCCGGCCTTTTTGTTTGCGGTGGTGTTGATCGTGTTTTTTGCTGGAGGGAATTATTGGCATTGGTTCCC
TTTAAAGGGGCTAGTGAGCGATAATTTTGAAAGTTTGAGCGCGTTAGGTAAAATCAAGGATTATTTATGGCATATCACTT
TGCCCGTTCTTTGCATTTCTTTAGGGGGTTTTGCAAGCCTTACGCTTTTAGTGAAAAACTCTTTTTTAGATGAAATGGGC
AAGCTCTATGTACTGAGCGCTAAGGCTAAGGGTTGTTCAGTGGGGCGTATTTTTTATGCGCATGTGTTCCGTAATGCGAT
TTTATTAGTGGTGGCGGGTTTCCCGCAAGCTTTTTTGGGCATGTTCTTTAGCTCAAGTTTGTTGATAGAGATTGTTTTTA
GCCTAGACGGGTTAGGGCTTTTAGGGTATGAAAGCATTGTGAGTAGGGATTATCCCGTTGTGTTTGGTTCGCTTTATATT
TTCACGCTTTTAGGTTTGGTAGCGAGTTTGATAAGCGATTTGCTCTGTGTGGTGATTGACCCTAGGATTGATTTTGAAAA
GCGTTGA

Upstream 100 bases:

>100_bases
ATTACAGGATCGCAGCGTATAATTACATTGGCATGCCTGAAATCAGCCCTAGCTATGGATTTTCGCCGTATTTGTGGTGG
ATAAAAGAAAAGGATCTTCA

Downstream 100 bases:

>100_bases
GGGTAGGAATGAAAACTGAGATGAAATCTTCTTTAAAACTTTTTATGCGGCCTTTGTTGGTGGTTTTAGCGTTCATGTTG
TTGTATGCTTTAGTGCATGC

Product: oligopeptide ABC transporter permease protein (oppB)

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MIAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQGLESDLLENLKKLYGFD
KPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIV
ANAIPAFLFAVVLIVFFAGGNYWHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMG
KLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLGYESIVSRDYPVVFGSLYI
FTLLGLVASLISDLLCVVIDPRIDFEKR

Sequences:

>Translated_348_residues
MIAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQGLESDLLENLKKLYGFD
KPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIV
ANAIPAFLFAVVLIVFFAGGNYWHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMG
KLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLGYESIVSRDYPVVFGSLYI
FTLLGLVASLISDLLCVVIDPRIDFEKR
>Mature_348_residues
MIAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQGLESDLLENLKKLYGFD
KPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIV
ANAIPAFLFAVVLIVFFAGGNYWHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMG
KLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLGYESIVSRDYPVVFGSLYI
FTLLGLVASLISDLLCVVIDPRIDFEKR

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4174

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=57.1428571428571, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI1789965, Length=363, Percent_Identity=26.4462809917355, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1787497, Length=346, Percent_Identity=28.0346820809249, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789888, Length=343, Percent_Identity=27.9883381924198, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1787053, Length=351, Percent_Identity=26.7806267806268, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787761, Length=288, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787550, Length=278, Percent_Identity=23.7410071942446, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38894; Mature: 38894

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYR
CHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
ASQGLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVS
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCE
ISLGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGG
EEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NYWHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMG
CEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
KLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGL
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
LGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRIDFEKR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYR
CHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
ASQGLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVS
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCE
ISLGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGG
EEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NYWHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMG
CEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
KLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGL
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
LGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRIDFEKR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]