| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645618
GI number: 15645618
Start: 1064965
End: 1066077
Strand: Reverse
Name: Not Available
Synonym: HP1003
Alternate gene names: NA
Gene position: 1066077-1064965 (Counterclockwise)
Preceding gene: 15645619
Following gene: 15645612
Centisome position: 63.92
GC content: 28.3
Gene sequence:
>1113_bases TTGGGTAGTGCAACTTCTCAAATAGAAAGTTTGAAAAAAAGAGAAAATGCCCTATTTGATCATTTAGATAGTCTAAAAAG TTTATTAGAAAAAACACATTGGGAAAAAGAAAAATTCACGCCCCCAATAAATGAAAAAGAACTTAATAGGCAACTTAAAG AAGTGAGATGGTTCAATAAAGAAACTCCAACTTCTAAAAACACTTATAAGAAAATTCAAAAATTAGCTGTTTATAAAAGC CCTTTAATAAAAGATTATCTTTATACCATTAAAAAACTTTTTGCCACACAAAAAAAGATTATAGATTTAGAAAAAAATTA TAAAGATTTAAGAGCCTTAAAGGAAGAATTTAGCAAAGATTTAGAAACTGATTTATCCCATTCAAAAAAACGCTTTGAAC TTTACACTAGACTAAAGAGCATGAGCAAAGTTTTTATAAGCAAAAGCATTGTTAAAAATTTAGAAAAAATTGCTTTAGAT TTTAAAAGCGATAGACATAGTATTTCGCAAAGAGCTTTTGAATTTTTTAAGTATATGAATTATCAAAATTTAAGCTTGAC TGATAAAGGCAATATGTTTTTAGTGGCTAAGTTTTTTAAAGATAGTGCTTTACTTGTTAATATTGCTAGGTTTGAAATGA AAAAGATAGATGATAGTGTTAAAAATTCTAACCCACAAGACAATTTATTAGACAAACAAGTTTGGCTCAATCTTTTAGAG CATTTAAAAAGACTTGAAGAGGAAAATTATTGTTTTGCTAAGAAACGAAAAGAATTCTTAGAGACTAGAGCGATGGAGCT ATCAAAAGATTTAAAATTTTTAACACAGGCTAATGAAAATGATTTGCCCATTTATGAAAGAGGGCAAAGGGATAAAATCA TTAAACGCTGTGAAAAATCGCTTAACTTTTTGCAGAAAGAATTACAATGCTTTAAAACCTTATTGAAAAGTGCAAGTATA GCTTTAGAAAACTTGCAAAATAACCATCAAATCACAGCCGTTACACAAGACACGCAAGAAAACACAAACGCGCTCAAAAA TACTACTCAAGATTTTAACAAAACTACCAATGAACCAACAAACCCTAACAATAACTATGGAATGGATTTTTAA
Upstream 100 bases:
>100_bases TTTATAAGGCGATTAAAGACATAGAAACAGAGCTAGATGCACTAGAAAACAGGCTAGAAACAATAAGAGTTTTAGGCATG AAAACTATTTTTATAAAGTT
Downstream 100 bases:
>100_bases AACCATCCATAAAATTAAATAACTTTACTTAGCGTATTTTTTAACCAATTCTTCTAAAGTGAAACCCAAGCCTTTGTTAT CATCTCTCAATTGCTCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKS PLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALD FKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASI ALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF
Sequences:
>Translated_370_residues MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKS PLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALD FKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASI ALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF >Mature_369_residues GSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSP LIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDF KSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEH LKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIA LENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43782; Mature: 43650
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCC ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC YQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE CCCCCEECCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKS HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH LNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC NPNNNYGMDF CCCCCCCCCC >Mature Secondary Structure GSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCC ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC YQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE CCCCCEECCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKS HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH LNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC NPNNNYGMDF CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA