| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645465
GI number: 15645465
Start: 896843
End: 899443
Strand: Reverse
Name: Not Available
Synonym: HP0846
Alternate gene names: 15645465
Gene position: 899443-896843 (Counterclockwise)
Preceding gene: 15645466
Following gene: 15645464
Centisome position: 53.93
GC content: 37.79
Gene sequence:
>2601_bases TTGCAAGTGATCCACCAATACAGCAATAAAGGGGGGAAGTATCAAAACCGCTATGATGTGAGTATCCTTGTGAATGGCTT GCCTTTAGTGCATGTGGAATTGAAAAAAAGAGGCGTGGCGATCAGGGAGGCGTTCAACCAGATCAAGCGCTATAAAAGGG ATAGTTTTAGCGCTGAAGACGGGCTTTTTGATTTTGTGCAGATTTTTGTCATCAGTAACGGCACGAGCTCTAAATACTAT TCAAACACCACAAGAATAGCCCAGCTGGAAAAAAACCATAAAGCCGATACTTTTGAATTCACGAATTATTGGGCGGATAG CAAGAATCACAATATTGAGGATTTAATGGATTTTGCTAAGGCGTTTTTTGCAAAGCGCAGCCTTTTGAACGTTTTAACGT GCTATTGCGTTTTCACAAGCGAAGAGGTTTTATTGGTGATGCGGCCTTATCAAATCGTGGCGGCCGAAAGGATTTTGGAA AAGATCAAAACCGCGCAAAATAGTAAAACGAAAAATCAAAGCAAAGGCTATATCTGGCACACGACAGGGAGCGGTAAAAC CCTAACGAGCTTTAAAAGCGCAACGTTGGCTAAAGAATTAGAGAGCGTTTCAAAAGTCTTGTTCGTGGTGGACAGGAAGG ATTTGGACTATCAAACCATGAAAGAATACGATAAATTCCAAAAAGATTGCGCTAATTCCAACACAAGCACTAAGATTTTA AAAGAACAGCTTGAAGATTCTAACGCTAAAATCATTATCACCACGATCCAAAAATTAGACAAATTCGTTAAATCCCATAA AGGGCATGCGATTTTTAATGAAGAAGTTGTGATGATTTTTGATGAATGCCACAGGAGTCAGTTAGGCTCTATGCATCAAG CCATCACTAAAGCGTTTAAAAAATACCACCTTTTTGGCTTTACTGGCACGCCCATTTTTGCAGCTAATTGCGATAAAAAC AACCCTTTAGGCACGACAGAGCAAAAGTTTGGGAAATGCCTCCACCAATACACCATTATTGATGCGATCAGGGATAAAAA CGTTTTGCCCTTTAGAGTGGAATACCACAACACCATTAAAGCTAAAGAGGACATTAAGGATAATAAGGTTAGAGCGGTTG ATGAAAAAAACGCCCTTTTGGATACTAGGAGGATCAAAGAAATCACTAAATGCATTTTAGAGCGTTTCAATCAAGCCACT AAAAATAAAAAATTCAATTCCATTCTGGCATGCTCTAGCATAGAAGCGCTGAAAAAATACTACCAAGCCTTTAAAGAAGA AAAACACGATCTTAAAATCGCTGCCATTTTTAGCTATAGCGCTAATGAGGAAATTGACACGCTAGAAGATGAAAACAATG AAAGCGCTTGCCGGCTAGACAAAAGCTCAAGGGATTTTTTAGAGGGCGCGATTGCGGATTATAATGGGATGTTTGGCGTT TCTTTTGACACTTCGGATCAAAAATTCCAAAGTTATTACAAGGATCTTTCTCAAAAAATGAAAGAGCGTAAAATCGATCT TTTAATGGTGGTGAACATGTTTTTGACCGGGTTTGACGCTACAAGGCTCAACACCCTTTGGGTGGATAAAAATCTCAAAT ACCATGGGCTAATTCAAGCTTTTTCACGCGCAAACCGCATTTTAGATAGCGTTAAAACGCATGGGAATATCGTGTGTTTT AGGGATTTAGAACAGGATTTGAATGACGCTCTCATGCTTTTTGGCAACAAGGACGCTCAATCTATTGCGCTGTTAAGAAA ATATGAAGATTATTTGAAAGGCTACACGGATAACAACAAAGAATACGAGGGCTATGAGGGTTTGATTAAAAGGCTTTTAA CCGAATTCCCATTAAAAGAGCCAATCGTTTCAGAAAGCCAGAAAAAGGATTTTATTAAGCTTTTTGGCAAGATTTTGAAA TTAGAAAATATTTTAAACAGCTTTGAAAATTTCAAAAAAGACGATTACATCAATCCCAGGGATTTTCAAGACTATCAAAG CAAATACCTTGATTTTTACGATGCAATGAGATCAGAAAAAGGGAAGGATAAAGAAGAGATTAATGATGATTTGATTTTTG AAATTGAACTCATCAAACAAGTGGAAGTCAATATTGACTATATTTTGAATTTGATTGAAGAGTTCGCTAAAGAGCATGGG GTGGAAATCCAAGGCGTTAAAACCAAAATAGAGCCAATCATCAACTCCAGCATAGAGTTAAGGAATAAAAAAGATTTGAT CATGGATTTCATTGACAAATACAACAAAGACCAAGAAGTCCATGCGCATTTTCAAGATTATATCCACCAAAAAAGAGAAG AGGAATTCCAAAATATCATAGAAGAAAACCGCTTGAATGAAGAAAAAGCCTATTCGTTCATGCAGCATGCCTTTAAAGGG GGCGAAATCAGTTTTAGTGGGACGGAATTCCCTAAAATCATTGAAGAAAAACCCTCCATGTTTGGTAAAAATTCGCGCTA TCAAGAGGTGAAAGAAAAAGTCGCTGCAAGCCTTTCTCGTTTTTTCCACCGCTTTTGTGATCTCACTAGCGCTATATTTA AGAAAAATGAGGTTAAAAAAGATGAGGTTAATGAAAAATAG
Upstream 100 bases:
>100_bases GAAAAAGATCCAAGAAGATCCGATTTTTAATCTCACGCTAGAGAACGGGAAAACCAAAAACATTAAAATCATTGATAAGA AAAATATCCATAGAAACGCC
Downstream 100 bases:
>100_bases TTCATGAACGCTTTTGCATTAAGGCTCAAAAAAAGCGCCGTTTAATGGATTTTTGTAAAATAAAAGAAATTTTAAGGAGG CTTGTGGTGTTGAAAGAATT
Product: type I restriction enzyme R protein (hsdR)
Products: NA
Alternate protein names: R.EcoR124II [H]
Number of amino acids: Translated: 866; Mature: 866
Protein sequence:
>866_residues MQVIHQYSNKGGKYQNRYDVSILVNGLPLVHVELKKRGVAIREAFNQIKRYKRDSFSAEDGLFDFVQIFVISNGTSSKYY SNTTRIAQLEKNHKADTFEFTNYWADSKNHNIEDLMDFAKAFFAKRSLLNVLTCYCVFTSEEVLLVMRPYQIVAAERILE KIKTAQNSKTKNQSKGYIWHTTGSGKTLTSFKSATLAKELESVSKVLFVVDRKDLDYQTMKEYDKFQKDCANSNTSTKIL KEQLEDSNAKIIITTIQKLDKFVKSHKGHAIFNEEVVMIFDECHRSQLGSMHQAITKAFKKYHLFGFTGTPIFAANCDKN NPLGTTEQKFGKCLHQYTIIDAIRDKNVLPFRVEYHNTIKAKEDIKDNKVRAVDEKNALLDTRRIKEITKCILERFNQAT KNKKFNSILACSSIEALKKYYQAFKEEKHDLKIAAIFSYSANEEIDTLEDENNESACRLDKSSRDFLEGAIADYNGMFGV SFDTSDQKFQSYYKDLSQKMKERKIDLLMVVNMFLTGFDATRLNTLWVDKNLKYHGLIQAFSRANRILDSVKTHGNIVCF RDLEQDLNDALMLFGNKDAQSIALLRKYEDYLKGYTDNNKEYEGYEGLIKRLLTEFPLKEPIVSESQKKDFIKLFGKILK LENILNSFENFKKDDYINPRDFQDYQSKYLDFYDAMRSEKGKDKEEINDDLIFEIELIKQVEVNIDYILNLIEEFAKEHG VEIQGVKTKIEPIINSSIELRNKKDLIMDFIDKYNKDQEVHAHFQDYIHQKREEEFQNIIEENRLNEEKAYSFMQHAFKG GEISFSGTEFPKIIEEKPSMFGKNSRYQEVKEKVAASLSRFFHRFCDLTSAIFKKNEVKKDEVNEK
Sequences:
>Translated_866_residues MQVIHQYSNKGGKYQNRYDVSILVNGLPLVHVELKKRGVAIREAFNQIKRYKRDSFSAEDGLFDFVQIFVISNGTSSKYY SNTTRIAQLEKNHKADTFEFTNYWADSKNHNIEDLMDFAKAFFAKRSLLNVLTCYCVFTSEEVLLVMRPYQIVAAERILE KIKTAQNSKTKNQSKGYIWHTTGSGKTLTSFKSATLAKELESVSKVLFVVDRKDLDYQTMKEYDKFQKDCANSNTSTKIL KEQLEDSNAKIIITTIQKLDKFVKSHKGHAIFNEEVVMIFDECHRSQLGSMHQAITKAFKKYHLFGFTGTPIFAANCDKN NPLGTTEQKFGKCLHQYTIIDAIRDKNVLPFRVEYHNTIKAKEDIKDNKVRAVDEKNALLDTRRIKEITKCILERFNQAT KNKKFNSILACSSIEALKKYYQAFKEEKHDLKIAAIFSYSANEEIDTLEDENNESACRLDKSSRDFLEGAIADYNGMFGV SFDTSDQKFQSYYKDLSQKMKERKIDLLMVVNMFLTGFDATRLNTLWVDKNLKYHGLIQAFSRANRILDSVKTHGNIVCF RDLEQDLNDALMLFGNKDAQSIALLRKYEDYLKGYTDNNKEYEGYEGLIKRLLTEFPLKEPIVSESQKKDFIKLFGKILK LENILNSFENFKKDDYINPRDFQDYQSKYLDFYDAMRSEKGKDKEEINDDLIFEIELIKQVEVNIDYILNLIEEFAKEHG VEIQGVKTKIEPIINSSIELRNKKDLIMDFIDKYNKDQEVHAHFQDYIHQKREEEFQNIIEENRLNEEKAYSFMQHAFKG GEISFSGTEFPKIIEEKPSMFGKNSRYQEVKEKVAASLSRFFHRFCDLTSAIFKKNEVKKDEVNEK >Mature_866_residues MQVIHQYSNKGGKYQNRYDVSILVNGLPLVHVELKKRGVAIREAFNQIKRYKRDSFSAEDGLFDFVQIFVISNGTSSKYY SNTTRIAQLEKNHKADTFEFTNYWADSKNHNIEDLMDFAKAFFAKRSLLNVLTCYCVFTSEEVLLVMRPYQIVAAERILE KIKTAQNSKTKNQSKGYIWHTTGSGKTLTSFKSATLAKELESVSKVLFVVDRKDLDYQTMKEYDKFQKDCANSNTSTKIL KEQLEDSNAKIIITTIQKLDKFVKSHKGHAIFNEEVVMIFDECHRSQLGSMHQAITKAFKKYHLFGFTGTPIFAANCDKN NPLGTTEQKFGKCLHQYTIIDAIRDKNVLPFRVEYHNTIKAKEDIKDNKVRAVDEKNALLDTRRIKEITKCILERFNQAT KNKKFNSILACSSIEALKKYYQAFKEEKHDLKIAAIFSYSANEEIDTLEDENNESACRLDKSSRDFLEGAIADYNGMFGV SFDTSDQKFQSYYKDLSQKMKERKIDLLMVVNMFLTGFDATRLNTLWVDKNLKYHGLIQAFSRANRILDSVKTHGNIVCF RDLEQDLNDALMLFGNKDAQSIALLRKYEDYLKGYTDNNKEYEGYEGLIKRLLTEFPLKEPIVSESQKKDFIKLFGKILK LENILNSFENFKKDDYINPRDFQDYQSKYLDFYDAMRSEKGKDKEEINDDLIFEIELIKQVEVNIDYILNLIEEFAKEHG VEIQGVKTKIEPIINSSIELRNKKDLIMDFIDKYNKDQEVHAHFQDYIHQKREEEFQNIIEENRLNEEKAYSFMQHAFKG GEISFSGTEFPKIIEEKPSMFGKNSRYQEVKEKVAASLSRFFHRFCDLTSAIFKKNEVKKDEVNEK
Specific function: The EcoR124/3 I enzyme recognizes 5'-GAAN(7)RTCG-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG0610
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014021 - InterPro: IPR004473 - InterPro: IPR006935 - InterPro: IPR007409 - InterPro: IPR022625 [H]
Pfam domain/function: PF12008 EcoR124_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 100948; Mature: 100948
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVIHQYSNKGGKYQNRYDVSILVNGLPLVHVELKKRGVAIREAFNQIKRYKRDSFSAED CCCHHHHHCCCCCCCCEEEEEEEECCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCC GLFDFVQIFVISNGTSSKYYSNTTRIAQLEKNHKADTFEFTNYWADSKNHNIEDLMDFAK CHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCCEEHHHHCCCCCCCCHHHHHHHHH AFFAKRSLLNVLTCYCVFTSEEVLLVMRPYQIVAAERILEKIKTAQNSKTKNQSKGYIWH HHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE TTGSGKTLTSFKSATLAKELESVSKVLFVVDRKDLDYQTMKEYDKFQKDCANSNTSTKIL ECCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHH KEQLEDSNAKIIITTIQKLDKFVKSHKGHAIFNEEVVMIFDECHRSQLGSMHQAITKAFK HHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHH KYHLFGFTGTPIFAANCDKNNPLGTTEQKFGKCLHQYTIIDAIRDKNVLPFRVEYHNTIK HHEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC AKEDIKDNKVRAVDEKNALLDTRRIKEITKCILERFNQATKNKKFNSILACSSIEALKKY CHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH YQAFKEEKHDLKIAAIFSYSANEEIDTLEDENNESACRLDKSSRDFLEGAIADYNGMFGV HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEE SFDTSDQKFQSYYKDLSQKMKERKIDLLMVVNMFLTGFDATRLNTLWVDKNLKYHGLIQA EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEECCCCHHHHHHH FSRANRILDSVKTHGNIVCFRDLEQDLNDALMLFGNKDAQSIALLRKYEDYLKGYTDNNK HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC EYEGYEGLIKRLLTEFPLKEPIVSESQKKDFIKLFGKILKLENILNSFENFKKDDYINPR CCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DFQDYQSKYLDFYDAMRSEKGKDKEEINDDLIFEIELIKQVEVNIDYILNLIEEFAKEHG CHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEHEEHHHHHCCHHHHHHHHHHHHHHCC VEIQGVKTKIEPIINSSIELRNKKDLIMDFIDKYNKDQEVHAHFQDYIHQKREEEFQNII CEEEEHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH EENRLNEEKAYSFMQHAFKGGEISFSGTEFPKIIEEKPSMFGKNSRYQEVKEKVAASLSR HHHCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCHHHCCCCCHHHHHHHHHHHHHHH FFHRFCDLTSAIFKKNEVKKDEVNEK HHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQVIHQYSNKGGKYQNRYDVSILVNGLPLVHVELKKRGVAIREAFNQIKRYKRDSFSAED CCCHHHHHCCCCCCCCEEEEEEEECCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCCC GLFDFVQIFVISNGTSSKYYSNTTRIAQLEKNHKADTFEFTNYWADSKNHNIEDLMDFAK CHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCCEEHHHHCCCCCCCCHHHHHHHHH AFFAKRSLLNVLTCYCVFTSEEVLLVMRPYQIVAAERILEKIKTAQNSKTKNQSKGYIWH HHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE TTGSGKTLTSFKSATLAKELESVSKVLFVVDRKDLDYQTMKEYDKFQKDCANSNTSTKIL ECCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHH KEQLEDSNAKIIITTIQKLDKFVKSHKGHAIFNEEVVMIFDECHRSQLGSMHQAITKAFK HHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHH KYHLFGFTGTPIFAANCDKNNPLGTTEQKFGKCLHQYTIIDAIRDKNVLPFRVEYHNTIK HHEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC AKEDIKDNKVRAVDEKNALLDTRRIKEITKCILERFNQATKNKKFNSILACSSIEALKKY CHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH YQAFKEEKHDLKIAAIFSYSANEEIDTLEDENNESACRLDKSSRDFLEGAIADYNGMFGV HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEE SFDTSDQKFQSYYKDLSQKMKERKIDLLMVVNMFLTGFDATRLNTLWVDKNLKYHGLIQA EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEECCCCHHHHHHH FSRANRILDSVKTHGNIVCFRDLEQDLNDALMLFGNKDAQSIALLRKYEDYLKGYTDNNK HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC EYEGYEGLIKRLLTEFPLKEPIVSESQKKDFIKLFGKILKLENILNSFENFKKDDYINPR CCCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DFQDYQSKYLDFYDAMRSEKGKDKEEINDDLIFEIELIKQVEVNIDYILNLIEEFAKEHG CHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEHEEHHHHHCCHHHHHHHHHHHHHHCC VEIQGVKTKIEPIINSSIELRNKKDLIMDFIDKYNKDQEVHAHFQDYIHQKREEEFQNII CEEEEHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH EENRLNEEKAYSFMQHAFKGGEISFSGTEFPKIIEEKPSMFGKNSRYQEVKEKVAASLSR HHHCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCHHHCCCCCHHHHHHHHHHHHHHH FFHRFCDLTSAIFKKNEVKKDEVNEK HHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2784505 [H]