| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645426
GI number: 15645426
Start: 860994
End: 863357
Strand: Reverse
Name: Not Available
Synonym: HP0807
Alternate gene names: 15645426
Gene position: 863357-860994 (Counterclockwise)
Preceding gene: 15645427
Following gene: 15645424
Centisome position: 51.76
GC content: 42.09
Gene sequence:
>2364_bases ATGAATGGTTATTTGAGAGTAAAAACCTCTTATTTTTTAGCGTTGAACGCTTTGACTTTTTTGTCTTTTAACTCTTTGGT GGGCGCGAAAGAACAGCATCACACTTTGCAAAAAGTGACAACCACTGAGCAAAAATTCAATCCAAGCGCGCCGCTTTCAT GGCAAAGCGAAGAGATGCGTAATTCCACAAGCTCTCGCACGGTGATTTCCAACAAGGAACTCAAAAAAACGGGGAATTTG AATATTGAAAACGCCTTGCAAAACGTGCCAGGGATTCAAATCAGAGACGCTACAGGCACAGGCGTGCTGCCTAAAATTTC GGTGCGCGGTTTTGGTGGGGGCGGTAACGGGCATAGCAATACCAACATGATTTTAGTCAATGGTATCCCCATTTATGGCG CGCCGTATTCCAATATTGAACTGGCGATTTTCCCTGTAACTTTCCAGTCAGTGGATAGGATTGATGTGATTAAAGGGGGC ACGAGCGTGCAATACGGCCCTAATACTTTTGGAGGCGTGGTGAATATCATCACTAAAGAAATCCCTAAAGAGTGGGAAAA TCAAGCGGCTGAAAGGATCACTTTTTGGGGGCGATCCTCTAATGGGAATTTTGTAGATCCCAAAGAAAAAGGCAAGCCTT TAGCCCAAACTTTAGGAAACCAAATGCTGTTTAACACTTACGGGCGAACGGCTGGAATGTTGGGTAAGCATGTAGGAATT AGCGCTCAAGGCAATTGGATTAACGGGCAAGGTTTCAGGCAAAACAGCCCCACAAAGGTGCAAAACTACTTGCTTGATGC GGTTTATAAGATTAATGCGACCAATACTTTTAAAGCTTATTACCAATATTATCAATACAACTCTTACCATCCAGGCACTT TGAGTGCACAAGATTATGCTTATAACCGCTTCATTAATGAGCGCCCTGACAATCAAGATGGAGGGCGAGCCAAGCGCTTT GGGATCGTGTATCAAAATTATTTTGGCGATCCGGATAGGAAAGTGGGGGGAGATTTTAAATTCACTTATTTCACGCATGA CATGAGTAGGGATTTTGGGTTTTCCAACCAATACCAAAGCGTGTATATGAGCAGTCAAAACAAGATTTTACCTTTTAAAG GCAAGGGAAAAATTAGCGCGACTAACCCTAATTGCGGTTTGTATTCTTATAGCGACACGAACAGCCCTTGTTGGCAATTT TTTGACAATATCCGCCGATCCGTGGTGAATGCCTTTGAGCCAAAACTCAATCTTATCGTCAATACCGGTAAAGTCAAACA AACTTTTAATATGGGAATGCGCTTTTTAACTGAAGATTTATACCGCCGATCCACCACCAGGAAAAACCCTAGCATGCCTA ATAATGGGAGTGGTTTTGATGCAGGAACTTCACTCAATAATTTCAACAATTATACCGCTGTGTATGCCAGCGATGAGATC AATTTCAATAACGGCATGCTAACGATCACGCCGGGCTTGAGATACACTTTTTTAAATTACGAAAAAAAAGACGCTCCTCC TTTTAAAGCAGGCCAAACAGGAAAAACCATTAAAGATCGTTATAACCAATGGAATCCAGCAGTGAATGTCGGCTATAAAC CCATTAAAGAATTGTTGTTTTATTTCAATTACCAAAGAAGCTACATTCCGCCTCAATTCAGCAATATCGGTAGTTTTGTA GGCACAAGCACGGATTATTTTCAAATCTTTAATGTCATGGAAGGCGGCTCAAGATATTATTTTAACAACCAAGTGAGTTT TAACGCGAATTATTTTGTGATTTTTGCGAATAACTATTTTACCGGGCGCTATGGGGATAATAAAGAGCCGGTCAATGCGA GATCGCAAGGCGTGGAGCTAGAGTTGTATTACACGCCGATTAGAGGGCTTAATTTCCATGCGGCTTACACTTTCATAGAT GCCAATATCACAAGCCACACGATGGTTACTAACCCCGCTAATCCTAAAGGGCCTAAAAAAGATATTTTTGGCAAAAAGCT CCCTTTTGTAAGCCCGCACCAATTCATTTTAGACGCGAGCTACACTTACGCTAAAACCACGATTGGGTTGAGTTCTTTCT TTTATAGCCGAACTTATAGCGATGTGTTAAACACCGTGCCTTTTATTCAATACGCGCCCACGATCAAAAATGGTGCTATC ACTACCAAAACAGCGGGCATGACGCCATGGTATTGGGTGTGGAATTTGCAAATTTCTACCACTTTTTGGGAACGCAAAAA GCAAAGCGTTAATGCGAGCTTGCAAATCAATAACATTTTTAACATGAAATATTGGTTTAGCGGGATAGGCACTAGCCTAA CGGGAAAGAAGCCGCGCCTCCTAGGAGCATCACAGCGTATGTGA
Upstream 100 bases:
>100_bases AATTGCAAATAAATAAAATCAAACTTCAAAATTTAAGTTAATTTTAATAATTATTTTTATAGTATGCATCGGTTTGAATT AAATGAGAAAGGTTATCACA
Downstream 100 bases:
>100_bases GCTATCATTTTTAATTTTAGGGTTGTAATGTTTTGAGAAGTTGGGCGTAAAAAATGGTATTTTGTTTTAAACGCTCTCTT AGAGCGCGGTAATTAGGGCA
Product: iron(III) dicitrate transport protein (fecA)
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MNGYLRVKTSYFLALNALTFLSFNSLVGAKEQHHTLQKVTTTEQKFNPSAPLSWQSEEMRNSTSSRTVISNKELKKTGNL NIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSNTNMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGG TSVQYGPNTFGGVVNIITKEIPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI SAQGNWINGQGFRQNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYAYNRFINERPDNQDGGRAKRF GIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQSVYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQF FDNIRRSVVNAFEPKLNLIVNTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSMPNNGSGFDAGTSLNNFNNYTAVYASDEI NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPAVNVGYKPIKELLFYFNYQRSYIPPQFSNIGSFV GTSTDYFQIFNVMEGGSRYYFNNQVSFNANYFVIFANNYFTGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFID ANITSHTMVTNPANPKGPKKDIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSRTYSDVLNTVPFIQYAPTIKNGAI TTKTAGMTPWYWVWNLQISTTFWERKKQSVNASLQINNIFNMKYWFSGIGTSLTGKKPRLLGASQRM
Sequences:
>Translated_787_residues MNGYLRVKTSYFLALNALTFLSFNSLVGAKEQHHTLQKVTTTEQKFNPSAPLSWQSEEMRNSTSSRTVISNKELKKTGNL NIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSNTNMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGG TSVQYGPNTFGGVVNIITKEIPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI SAQGNWINGQGFRQNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYAYNRFINERPDNQDGGRAKRF GIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQSVYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQF FDNIRRSVVNAFEPKLNLIVNTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSMPNNGSGFDAGTSLNNFNNYTAVYASDEI NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPAVNVGYKPIKELLFYFNYQRSYIPPQFSNIGSFV GTSTDYFQIFNVMEGGSRYYFNNQVSFNANYFVIFANNYFTGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFID ANITSHTMVTNPANPKGPKKDIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSRTYSDVLNTVPFIQYAPTIKNGAI TTKTAGMTPWYWVWNLQISTTFWERKKQSVNASLQINNIFNMKYWFSGIGTSLTGKKPRLLGASQRM >Mature_787_residues MNGYLRVKTSYFLALNALTFLSFNSLVGAKEQHHTLQKVTTTEQKFNPSAPLSWQSEEMRNSTSSRTVISNKELKKTGNL NIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSNTNMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGG TSVQYGPNTFGGVVNIITKEIPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI SAQGNWINGQGFRQNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYAYNRFINERPDNQDGGRAKRF GIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQSVYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQF FDNIRRSVVNAFEPKLNLIVNTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSMPNNGSGFDAGTSLNNFNNYTAVYASDEI NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPAVNVGYKPIKELLFYFNYQRSYIPPQFSNIGSFV GTSTDYFQIFNVMEGGSRYYFNNQVSFNANYFVIFANNYFTGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFID ANITSHTMVTNPANPKGPKKDIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSRTYSDVLNTVPFIQYAPTIKNGAI TTKTAGMTPWYWVWNLQISTTFWERKKQSVNASLQINNIFNMKYWFSGIGTSLTGKKPRLLGASQRM
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=714, Percent_Identity=25.2100840336134, Blast_Score=172, Evalue=8e-44, Organism=Escherichia coli, GI1788478, Length=134, Percent_Identity=32.089552238806, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88947; Mature: 88947
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGYLRVKTSYFLALNALTFLSFNSLVGAKEQHHTLQKVTTTEQKFNPSAPLSWQSEEMR CCCEEEEEEHEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH NSTSSRTVISNKELKKTGNLNIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSN CCCCCCEEECCCHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCC TNMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGGTSVQYGPNTFGGVVNIITKE CCEEEEECEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEECCCHHHHHHHHHHHH IPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI CCHHHHHHHHHEEEEEEECCCCCCCCCHHCCCHHHHHHCCCEEEHHCCCHHHHHHHCCCC SAQGNWINGQGFRQNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYA CCCCCEECCCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHH YNRFINERPDNQDGGRAKRFGIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQS HHHHHCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCE VYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQFFDNIRRSVVNAFEPKLNLIV EEECCCCCEEEECCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE NTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSMPNNGSGFDAGTSLNNFNNYTAVYASDEI ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCE NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPAVNVGYKPIKELLF ECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCHHHHHHHHH YFNYQRSYIPPQFSNIGSFVGTSTDYFQIFNVMEGGSRYYFNNQVSFNANYFVIFANNYF HHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCEEEECCCEEEEEECCEE TGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFIDANITSHTMVTNPANPKGPKK ECCCCCCCCCCCHHHCCEEEEEEEECCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCH DIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSRTYSDVLNTVPFIQYAPTIKNGAI HHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEE TTKTAGMTPWYWVWNLQISTTFWERKKQSVNASLQINNIFNMKYWFSGIGTSLTGKKPRL EEECCCCCCEEEEEEEEEEHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCC LGASQRM CCCCCCC >Mature Secondary Structure MNGYLRVKTSYFLALNALTFLSFNSLVGAKEQHHTLQKVTTTEQKFNPSAPLSWQSEEMR CCCEEEEEEHEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH NSTSSRTVISNKELKKTGNLNIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSN CCCCCCEEECCCHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCC TNMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGGTSVQYGPNTFGGVVNIITKE CCEEEEECEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEECCCHHHHHHHHHHHH IPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI CCHHHHHHHHHEEEEEEECCCCCCCCCHHCCCHHHHHHCCCEEEHHCCCHHHHHHHCCCC SAQGNWINGQGFRQNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYA CCCCCEECCCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHH YNRFINERPDNQDGGRAKRFGIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQS HHHHHCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCE VYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQFFDNIRRSVVNAFEPKLNLIV EEECCCCCEEEECCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE NTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSMPNNGSGFDAGTSLNNFNNYTAVYASDEI ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCE NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPAVNVGYKPIKELLF ECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCHHHHHHHHH YFNYQRSYIPPQFSNIGSFVGTSTDYFQIFNVMEGGSRYYFNNQVSFNANYFVIFANNYF HHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCEEEECCCEEEEEECCEE TGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFIDANITSHTMVTNPANPKGPKK ECCCCCCCCCCCHHHCCEEEEEEEECCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCH DIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSRTYSDVLNTVPFIQYAPTIKNGAI HHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEE TTKTAGMTPWYWVWNLQISTTFWERKKQSVNASLQINNIFNMKYWFSGIGTSLTGKKPRL EEECCCCCCEEEEEEEEEEHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCC LGASQRM CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]