| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645309
GI number: 15645309
Start: 734843
End: 737146
Strand: Reverse
Name: Not Available
Synonym: HP0686
Alternate gene names: 15645309
Gene position: 737146-734843 (Counterclockwise)
Preceding gene: 15645310
Following gene: 15645307
Centisome position: 44.2
GC content: 39.76
Gene sequence:
>2304_bases ATGAAAAGAATTTTAGTCTCTTTGGCTGTTTTGAGTCATAGCGCGCATGCTGTCAAAACTCATAATTTGGAAAGGGTGGA AGCTTCAGGGGTGGCTAACGATAAGGAAGCGCCTTTAAGCTGGAGGAGCAAGGAAGTGAGAAACTATATGGGATCTCGCA CGGTGATTTCTAACAAGCAACTCACTAAAAGCGCCAATCAGAGCATTGAAGAAGCTTTGCAAAATGTGCCAGGCGTGCAT ATTAGAAACGCTACGGGTATTGGAGCTGTGCCTAGCTTTTCTGTTAGGGGCTTTGGTGGGGGAAGTTCAGGGCATTCCAA TACGGCTATGGTTTTAGTCAATGGGATCCCTATTTATGTTGCGCCCTATGTTGATATTAGCATTCCTATTTTCCCTGTAA CCTTTCAATCTGTAGATAGAATCAGCGTAACCAAGGGTGGGGAGAGCGTGCGTTATGGCCCTAATGTTTTTGGCGGTGTG ATTAATGTGATCACTAAGGGCATTCCTACCAAGTGGGAGAGTCAGGTGAGCGAGAGGGCCACTTTTTGGGGCAAATCTGA AAATGGGGGCTTTTTCAATCAAAATTCTAAAAACCTTGACAAAAGCTTAGCCAATAACATGCTTTTTGACACTTACTTAA GAACAGGGGGCATGATGAATAAGCATTTTGGAATCCAAGCTCAAGCCAACTGGCTTAAAGGGCAAGGGTTTAGATACAAC AGCCCTACGAACATTCAAAACTACATGCTAGATTCCTTGTATCAAATTAATGATAGTAATAAGATCACTGCTTTTTTCCA ATACTATAATTATTTTATGGCAGACCCCGGATCTTTAGGCATAGAAGCGTATAATCAAAATCGTTTTCAAAACAACCGCC CTAATAACAATAAAAGCGGGAGAGCGAAGCGATGGGGAGCTGTGTATCAAAACTTTTTTGGGGATACGGACAAAATAGGT GGGGATTTCACTTTTAGTTACTATGGGCATGACATGTCAAGGGATTTTCAATTTGATTCTAATTTTTTGAATGTCAATAC CAATCCTAAATTAGGCCCTGTTTATACCGATCAAAATTATCCAGGATTTTTTATTTTTGATCATTTAAGGCGTTACATAA TGAACGCTTTTGAGCCTAATTTGAACTTAGTTGTCAATACCAATAAAGTTAAGCAAACTTTTAATGTGGGCATGCGTTTT ATGACAATGGATATGTATTTCAGATTGGATCAAAGCACATGCGAAAAAACCGATATTTTTAATGGGGTGTGCCGCATGCC TCCTTTTGTTCTTTCTAAAAAACCCAGCAACAATCAAAACCTGTTTAACAACTATACAGCGGTATGGTTGAGCGATAAAA TAGAGCTTTTTGATTCTAAATTGGTGATAACTCCAGGGCTTAGATACACTTTTTTGAACTATAACAACAAAGAGCCAGAA AAGCATGATTTTTCTGTGTGGAATATTACAAAAAAGCGTCAAAACGAATGGAGTCCCGCCCTTAACATTGGCTATAAACC TATGGAAAATTGGATATGGTATGCGAACTACCGCCGCAGTTTTATCCCCCCACAACATACAATGCTAGGCATTACTAGGA CTAATTACAACCAAATTTTTAATGAAATTGAAGTGGGGCAACGCTATAGTTATAAAAATCTATTGAGCTTTAACACGAAT TATTTTGTGATTTTTGCCAAGCGTTACTATGCGGGAGGCTATAGCCCACAGCCTATTAACGCTAGGAGTCAAGGGGTAGA ATTGGAATTGTATTACGCGCCGATTAGGGGTTTGCAATTCCATGTGGCTTACACCTATATTGATGCACGCATCACTTCTA ACGCTGATGATATTGCTTATTATTTTACAGGCATTGTCAATAAACCCTTTGACATTAAAGGGAAGCGTTTGCCTTATGTG AGTCCTAACCAATTCATATTTGACATGATGTATACTTACAAGCACACGACTTTTGGTATTAGCAGCTATTTTTATAGCCG TGCTTATAGTTCTATGCTCAATCAGGCCAAAAGCCAAACCGTGTGCCTGCCCTTAAACCCAGAATACACAGGGGGGCTAG AGTATGGTTGTAATTCAGTAGGGTTATTGCCCTTGTATTTTGTGTTGAACGTTCAAGTAAGCTCGGTTTTATGGCAAAGC GGTAGGCATAAAATCACAGGGAGTTTGCAAATCAATAATCTTTTTAACATGAAGTATTATTTTAGGGGAATTGGCACAAG CCCTACAGGAAGAGAGCCCGCACCAGGGCGATCCATTACAGCGTATTTGAATTATGAGTTTTAA
Upstream 100 bases:
>100_bases TCTAAATAATAATTTTTCAAAAATTTAAGCTAAAACTAATAATGGTTATTATAAATTTCACATTGTTGTAAAAAAGAACA TTTTTCATAAAAGGTGGTAA
Downstream 100 bases:
>100_bases ACTAGCTTCAAGCTTTTATCGCTTGAATGCTTGTTAATATCAAACCATTTTAAAACTCGCCACTAAATTTTCGGTCAATA AATTAAACCCATCTACCAGA
Product: iron(III) dicitrate transport protein (fecA)
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 767; Mature: 767
Protein sequence:
>767_residues MKRILVSLAVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQLTKSANQSIEEALQNVPGVH IRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYVAPYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGV INVITKGIPTKWESQVSERATFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN SPTNIQNYMLDSLYQINDSNKITAFFQYYNYFMADPGSLGIEAYNQNRFQNNRPNNNKSGRAKRWGAVYQNFFGDTDKIG GDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNYPGFFIFDHLRRYIMNAFEPNLNLVVNTNKVKQTFNVGMRF MTMDMYFRLDQSTCEKTDIFNGVCRMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGLRYTFLNYNNKEPE KHDFSVWNITKKRQNEWSPALNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIFNEIEVGQRYSYKNLLSFNTN YFVIFAKRYYAGGYSPQPINARSQGVELELYYAPIRGLQFHVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYV SPNQFIFDMMYTYKHTTFGISSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF
Sequences:
>Translated_767_residues MKRILVSLAVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQLTKSANQSIEEALQNVPGVH IRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYVAPYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGV INVITKGIPTKWESQVSERATFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN SPTNIQNYMLDSLYQINDSNKITAFFQYYNYFMADPGSLGIEAYNQNRFQNNRPNNNKSGRAKRWGAVYQNFFGDTDKIG GDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNYPGFFIFDHLRRYIMNAFEPNLNLVVNTNKVKQTFNVGMRF MTMDMYFRLDQSTCEKTDIFNGVCRMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGLRYTFLNYNNKEPE KHDFSVWNITKKRQNEWSPALNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIFNEIEVGQRYSYKNLLSFNTN YFVIFAKRYYAGGYSPQPINARSQGVELELYYAPIRGLQFHVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYV SPNQFIFDMMYTYKHTTFGISSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF >Mature_767_residues MKRILVSLAVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQLTKSANQSIEEALQNVPGVH IRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYVAPYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGV INVITKGIPTKWESQVSERATFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN SPTNIQNYMLDSLYQINDSNKITAFFQYYNYFMADPGSLGIEAYNQNRFQNNRPNNNKSGRAKRWGAVYQNFFGDTDKIG GDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNYPGFFIFDHLRRYIMNAFEPNLNLVVNTNKVKQTFNVGMRF MTMDMYFRLDQSTCEKTDIFNGVCRMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGLRYTFLNYNNKEPE KHDFSVWNITKKRQNEWSPALNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIFNEIEVGQRYSYKNLLSFNTN YFVIFAKRYYAGGYSPQPINARSQGVELELYYAPIRGLQFHVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYV SPNQFIFDMMYTYKHTTFGISSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=721, Percent_Identity=22.8848821081831, Blast_Score=140, Evalue=3e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87699; Mature: 87699
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRILVSLAVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQ CCHHHEEHHHHHCCCCEEECCCCHHHECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCH LTKSANQSIEEALQNVPGVHIRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYV HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEE APYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGVINVITKGIPTKWESQVSERA EEEEEEEEEEEEEECCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHH TFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCEECC SPTNIQNYMLDSLYQINDSNKITAFFQYYNYFMADPGSLGIEAYNQNRFQNNRPNNNKSG CCCCHHHHHHHHHEEECCCCCEEEEEEEHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC RAKRWGAVYQNFFGDTDKIGGDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNY CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEECCCCCCCCEEECCCC PGFFIFDHLRRYIMNAFEPNLNLVVNTNKVKQTFNVGMRFMTMDMYFRLDQSTCEKTDIF CCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCEEEEEEEEEEEECCHHHHHHHHH NGVCRMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGLRYTFLNYNNKEPE CCHHCCCCCEEECCCCCCCCCCCCEEEEEEECCEEECCCEEEECCCCEEEEEECCCCCCC KHDFSVWNITKKRQNEWSPALNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIF CCCCEEEEEEHHHCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH NEIEVGQRYSYKNLLSFNTNYFVIFAKRYYAGGYSPQPINARSQGVELELYYAPIRGLQF HHHHHCCCCCCHHHEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEE HVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYVSPNQFIFDMMYTYKHTTFGI EEEEEEEEEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH SSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHC GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF CCEEEEEEEEECCEECEEEEEEECCCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKRILVSLAVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQ CCHHHEEHHHHHCCCCEEECCCCHHHECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCH LTKSANQSIEEALQNVPGVHIRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYV HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEE APYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGVINVITKGIPTKWESQVSERA EEEEEEEEEEEEEECCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHH TFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCEECC SPTNIQNYMLDSLYQINDSNKITAFFQYYNYFMADPGSLGIEAYNQNRFQNNRPNNNKSG CCCCHHHHHHHHHEEECCCCCEEEEEEEHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC RAKRWGAVYQNFFGDTDKIGGDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNY CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEECCCCCCCCEEECCCC PGFFIFDHLRRYIMNAFEPNLNLVVNTNKVKQTFNVGMRFMTMDMYFRLDQSTCEKTDIF CCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCEEEEEEEEEEEECCHHHHHHHHH NGVCRMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGLRYTFLNYNNKEPE CCHHCCCCCEEECCCCCCCCCCCCEEEEEEECCEEECCCEEEECCCCEEEEEECCCCCCC KHDFSVWNITKKRQNEWSPALNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIF CCCCEEEEEEHHHCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHH NEIEVGQRYSYKNLLSFNTNYFVIFAKRYYAGGYSPQPINARSQGVELELYYAPIRGLQF HHHHHCCCCCCHHHEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEE HVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYVSPNQFIFDMMYTYKHTTFGI EEEEEEEEEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH SSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHC GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF CCEEEEEEEEECCEECEEEEEEECCCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]