| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645069
GI number: 15645069
Start: 459333
End: 461756
Strand: Reverse
Name: Not Available
Synonym: HP0441
Alternate gene names: 15645069
Gene position: 461756-459333 (Counterclockwise)
Preceding gene: 15645070
Following gene: 15645068
Centisome position: 27.69
GC content: 31.44
Gene sequence:
>2424_bases ATGCTTGAGAAAATTTTTAATTCTTTATGCTCGCTAGTTCCTAAGCGTTATAACATGAAAGAAGAAACTAACATTGTGGG TATTTACAATGAGCATTATCTTTTAAGTGAAAAATCAAACCTTGTAGGCGCTCTTAAATTAGAGGGAATTTCTTATTTGT CTTTAGATGACAAAGAAATAGCGCAAAAATTTAATGAACGCATTTTAGCTCTTAATGAGATTGTAGATGGAGTGCATTTT AAAATCGTAGTTAAAAGGCGTAAGATTTTCATGCACCATGAATATACTCAAGAGGAGATAAGCAATCCTTTTGCATTAGA GGTTATCAATTTATGGGAGCAGGGGGTTGAGGATGTTTATCAAAATTTCTATTACTTAATTTTTGAAACTAAGAATGATA GCATTAAAGGTTATTTGGAACGATTTAAGAAAAAAATCACTACCAATGAATTAGAAAATATTCAAGAAAATAATAGACAA GATGAAGTTAAATATCAAGAAAACTATTTCATAGGCTTTGATAATTTTAATCTATTAGATAAATCTAAAATATTATACAG CATTATCAATAATGTTAAAAACATGCTTTCTGGCTTGTTTGTAGAAAAAATAGATGCCAATAGTTTGCTTAATTTTTATG CTGAATATATCAATGGTGTTCCTAGTGAATACACTTTTGCTAGAGGTCGTTTGCATGATGGCATGATCAATTCTGATGTG CATTTTAAAAAAGATTTTTTCACTCACATTCATAATGGTAAGGAGATTTTCAAGCGTTTCATCAGCATTAAGACTTATGA TATAGACAAAATTGTCAGCACTGCTCTTTCTTCAGTGTTGCATTTATCTTTAGAATTTGATGTGATTTTAAACATTGACA ATATTCCTAAAGCAAAGGCTGAAAAAAGGATTGAAACTAAAAGAAAAAGAGCGAATAAGAGCATTAGAGTTGAAATTGAT GAATTGAATGACATGATTAAAACAGACAGAGTTTTGATGCAGGAGATTTCTTTAAACATTTTAGTTCATGCCAAAACTAA AACCGATTTAGATAGTGCTTGTATAGAAATTACCAACTTGCTTAAACAAAAAGGTATTGTAAGCACACAAGAGAGTATTG GCATGTTGCCTATGTTTTTTAGCTTTTTCCCCAATCGTAATCGCTTGAATTTTAGAAAGCGTTTATTGTCTAGTCAAAAT ATTGCTTCTTTAATCATATTGGAAAAACAAAATTGTGGTTTTTCTAGAAATTCATGGGGTGATCGCCATTTGACTATTTT TAGAAACCAAGACAAATCGCCTTATTTATTCAATTTCCATGCTTATGAGGCAAAAAGAAAAAATGATATGGTATCAGGGC ATACCATCATCTTTGGTGGCACAGGGGCTGGTAAAACCACTTTAATTGAATTTTTAATCACCAATTGTTTTAAGTATGAA GATTTAAGTATTTTGGCTTTAGACAGAAATAATGGCATGCGTGTGATGACTGAGTTTTTAGATGGTCAATACAACGATAG CAATGATTTCTACATTAATCCGTTTTCTTTAAAAGATACAAGCGCTAATTGCACCTTTTTAGTGAGTTGGTTGGCATTCA TGCTCAATATTGATGAAGATACTAAAGATGAAAAAGAAAAAAAGACTTTAAGCGCTTTATCCAAAACAATCAGAGTTTGC TATAACAATATCACAAAACAAGGGGGTGCTATTTTCAAGTTAAGAGATTTTAAAGACACGCTAGAAATAGACTATTTAGA TAGCAAAGACATTTTAGAAAAAGAGAGTTCAAAAGACTTATACAAGCATTCTACTGATTGTTTAGACTTTGCTAAAAAGC TTTCTGTTATTGATATGGATGCTCTTTCTAGCAGTAAAAAAGATTTCAACTTGGCAGTGCTATACCTATTCTACAAAGTC ATGAATAGAGCTAAATTAGAAAACAAGCCTTTTTATATCTTCATTGATGAAGCAAAATCTGTTATTGAAAATCCCATCAT GTTAGCTAAAATCAAAGACACACTCGCTCAAGCTAGAAAGCTTAATGGGGTTTTAACTTTAGCCTTTCAAGACATTAACC AACTTGATGGCGTAGAGGGAGCAAAGTCCATTATAGAAAACGCCGCTCAAGTCATACTCTATCCTACAAACAATTTTGAG AAATTAGAGAGCTATGGCATTTTATTAAGTCCTATTGAAAAATCCTTTTTAAACAAAACGCCGTTAAACGCTAGGCAAGT ATTAGTGAAAAACCTTCTCACTCAATCTAGCGTATTTTTAGAAATCAATTTAGAAAAGCTAAACAGCACCAGTAAAAAAT TTTTAAGAGCGTATAACTCTAGCGCGTCTAGCGTTTTTGAACTGGAAACGCTTAAAAAGGATAATCCAAAGGATTATAAA GAAATTTACTTGACAAAGGAGTAG
Upstream 100 bases:
>100_bases AGTTGTGTGTTTATATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAG AACAGGAGCTAGAAATTATT
Downstream 100 bases:
>100_bases GAATGAAAGATAGCGTGATTATCATTGAAAGCCCTAATAAGGTTGAAAAGATTAAACAACTAACAGGTGCGGAAGTTTAT GCAACTATAGGGCATTTTAC
Product: VirB4-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 807
Protein sequence:
>807_residues MLEKIFNSLCSLVPKRYNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGISYLSLDDKEIAQKFNERILALNEIVDGVHF KIVVKRRKIFMHHEYTQEEISNPFALEVINLWEQGVEDVYQNFYYLIFETKNDSIKGYLERFKKKITTNELENIQENNRQ DEVKYQENYFIGFDNFNLLDKSKILYSIINNVKNMLSGLFVEKIDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDV HFKKDFFTHIHNGKEIFKRFISIKTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKAEKRIETKRKRANKSIRVEID ELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNLLKQKGIVSTQESIGMLPMFFSFFPNRNRLNFRKRLLSSQN IASLIILEKQNCGFSRNSWGDRHLTIFRNQDKSPYLFNFHAYEAKRKNDMVSGHTIIFGGTGAGKTTLIEFLITNCFKYE DLSILALDRNNGMRVMTEFLDGQYNDSNDFYINPFSLKDTSANCTFLVSWLAFMLNIDEDTKDEKEKKTLSALSKTIRVC YNNITKQGGAIFKLRDFKDTLEIDYLDSKDILEKESSKDLYKHSTDCLDFAKKLSVIDMDALSSSKKDFNLAVLYLFYKV MNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFE KLESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKKFLRAYNSSASSVFELETLKKDNPKDYK EIYLTKE
Sequences:
>Translated_807_residues MLEKIFNSLCSLVPKRYNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGISYLSLDDKEIAQKFNERILALNEIVDGVHF KIVVKRRKIFMHHEYTQEEISNPFALEVINLWEQGVEDVYQNFYYLIFETKNDSIKGYLERFKKKITTNELENIQENNRQ DEVKYQENYFIGFDNFNLLDKSKILYSIINNVKNMLSGLFVEKIDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDV HFKKDFFTHIHNGKEIFKRFISIKTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKAEKRIETKRKRANKSIRVEID ELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNLLKQKGIVSTQESIGMLPMFFSFFPNRNRLNFRKRLLSSQN IASLIILEKQNCGFSRNSWGDRHLTIFRNQDKSPYLFNFHAYEAKRKNDMVSGHTIIFGGTGAGKTTLIEFLITNCFKYE DLSILALDRNNGMRVMTEFLDGQYNDSNDFYINPFSLKDTSANCTFLVSWLAFMLNIDEDTKDEKEKKTLSALSKTIRVC YNNITKQGGAIFKLRDFKDTLEIDYLDSKDILEKESSKDLYKHSTDCLDFAKKLSVIDMDALSSSKKDFNLAVLYLFYKV MNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFE KLESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKKFLRAYNSSASSVFELETLKKDNPKDYK EIYLTKE >Mature_807_residues MLEKIFNSLCSLVPKRYNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGISYLSLDDKEIAQKFNERILALNEIVDGVHF KIVVKRRKIFMHHEYTQEEISNPFALEVINLWEQGVEDVYQNFYYLIFETKNDSIKGYLERFKKKITTNELENIQENNRQ DEVKYQENYFIGFDNFNLLDKSKILYSIINNVKNMLSGLFVEKIDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDV HFKKDFFTHIHNGKEIFKRFISIKTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKAEKRIETKRKRANKSIRVEID ELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNLLKQKGIVSTQESIGMLPMFFSFFPNRNRLNFRKRLLSSQN IASLIILEKQNCGFSRNSWGDRHLTIFRNQDKSPYLFNFHAYEAKRKNDMVSGHTIIFGGTGAGKTTLIEFLITNCFKYE DLSILALDRNNGMRVMTEFLDGQYNDSNDFYINPFSLKDTSANCTFLVSWLAFMLNIDEDTKDEKEKKTLSALSKTIRVC YNNITKQGGAIFKLRDFKDTLEIDYLDSKDILEKESSKDLYKHSTDCLDFAKKLSVIDMDALSSSKKDFNLAVLYLFYKV MNRAKLENKPFYIFIDEAKSVIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFE KLESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKKFLRAYNSSASSVFELETLKKDNPKDYK EIYLTKE
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 93385; Mature: 93385
Theoretical pI: Translated: 8.03; Mature: 8.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEKIFNSLCSLVPKRYNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGISYLSLDDKEI CHHHHHHHHHHHCCHHCCCCCCCCEEEEECCCEEEECCCCCEEEEEECCEEEECCCHHHH AQKFNERILALNEIVDGVHFKIVVKRRKIFMHHEYTQEEISNPFALEVINLWEQGVEDVY HHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHH QNFYYLIFETKNDSIKGYLERFKKKITTNELENIQENNRQDEVKYQENYFIGFDNFNLLD CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCH KSKILYSIINNVKNMLSGLFVEKIDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDV HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCC HFKKDFFTHIHNGKEIFKRFISIKTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKA CHHHHHHHHHCCCHHHHHHHHHHEECCHHHHHHHHHHHHHEEEEEEEEEEECCCCCCHHH EKRIETKRKRANKSIRVEIDELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNL HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHH LKQKGIVSTQESIGMLPMFFSFFPNRNRLNFRKRLLSSQNIASLIILEKQNCGFSRNSWG HHHCCCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC DRHLTIFRNQDKSPYLFNFHAYEAKRKNDMVSGHTIIFGGTGAGKTTLIEFLITNCFKYE CCEEEEEECCCCCCEEEEEEHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC DLSILALDRNNGMRVMTEFLDGQYNDSNDFYINPFSLKDTSANCTFLVSWLAFMLNIDED CEEEEEEECCCCHHHHHHHHCCCCCCCCCEEEECEECCCCCCCHHHHHHHHHHHHCCCCC TKDEKEKKTLSALSKTIRVCYNNITKQGGAIFKLRDFKDTLEIDYLDSKDILEKESSKDL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCHHHHHCCCCCHH YKHSTDCLDFAKKLSVIDMDALSSSKKDFNLAVLYLFYKVMNRAKLENKPFYIFIDEAKS HHCCCHHHHHHHHCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH VIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFE HHHCCEEEHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHCCCEEEEECCCCHH KLESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKKFLRAYNS HHHHCCCEEEHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHHHHCC SASSVFELETLKKDNPKDYKEIYLTKE CCCCEEEHHHHCCCCCCCHHHEEEECC >Mature Secondary Structure MLEKIFNSLCSLVPKRYNMKEETNIVGIYNEHYLLSEKSNLVGALKLEGISYLSLDDKEI CHHHHHHHHHHHCCHHCCCCCCCCEEEEECCCEEEECCCCCEEEEEECCEEEECCCHHHH AQKFNERILALNEIVDGVHFKIVVKRRKIFMHHEYTQEEISNPFALEVINLWEQGVEDVY HHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHH QNFYYLIFETKNDSIKGYLERFKKKITTNELENIQENNRQDEVKYQENYFIGFDNFNLLD CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCH KSKILYSIINNVKNMLSGLFVEKIDANSLLNFYAEYINGVPSEYTFARGRLHDGMINSDV HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCC HFKKDFFTHIHNGKEIFKRFISIKTYDIDKIVSTALSSVLHLSLEFDVILNIDNIPKAKA CHHHHHHHHHCCCHHHHHHHHHHEECCHHHHHHHHHHHHHEEEEEEEEEEECCCCCCHHH EKRIETKRKRANKSIRVEIDELNDMIKTDRVLMQEISLNILVHAKTKTDLDSACIEITNL HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHH LKQKGIVSTQESIGMLPMFFSFFPNRNRLNFRKRLLSSQNIASLIILEKQNCGFSRNSWG HHHCCCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC DRHLTIFRNQDKSPYLFNFHAYEAKRKNDMVSGHTIIFGGTGAGKTTLIEFLITNCFKYE CCEEEEEECCCCCCEEEEEEHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC DLSILALDRNNGMRVMTEFLDGQYNDSNDFYINPFSLKDTSANCTFLVSWLAFMLNIDED CEEEEEEECCCCHHHHHHHHCCCCCCCCCEEEECEECCCCCCCHHHHHHHHHHHHCCCCC TKDEKEKKTLSALSKTIRVCYNNITKQGGAIFKLRDFKDTLEIDYLDSKDILEKESSKDL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCHHHHHCCCCCHH YKHSTDCLDFAKKLSVIDMDALSSSKKDFNLAVLYLFYKVMNRAKLENKPFYIFIDEAKS HHCCCHHHHHHHHCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH VIENPIMLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFE HHHCCEEEHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHCCCEEEEECCCCHH KLESYGILLSPIEKSFLNKTPLNARQVLVKNLLTQSSVFLEINLEKLNSTSKKFLRAYNS HHHHCCCEEEHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHHHHCC SASSVFELETLKKDNPKDYKEIYLTKE CCCCEEEHHHHCCCCCCCHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12910271; 3584073 [H]