| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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The map label for this gene is pheT
Identifier: 15645030
GI number: 15645030
Start: 413341
End: 415635
Strand: Reverse
Name: pheT
Synonym: HP0402
Alternate gene names: 15645030
Gene position: 415635-413341 (Counterclockwise)
Preceding gene: 15645031
Following gene: 15645029
Centisome position: 24.92
GC content: 39.13
Gene sequence:
>2295_bases ATGAAACTGAGCATTAATGATTTGAATGTTTTTGTCAATACGCCTAAAGATATAGCCAAACTCTGTGAGGATTTGAGTCG CTTAGGTTTAGAAGTGGAAAGCTGTATCCCTTGTATCGCTCCTAAAAATGTGGTTGTGGGTAAAATTTTAGAAAAAGCCC CCCATAAAAACGCTGAAAAACTCAGCGTGTGTCAAGTGGATGTGGGTAAAGAAGTGTTGCAAATCGTGTGTGGGGCTAAA AATGTCGCGCCAAACCAATTCGTGCCAGTCGCTTTAAACGGGGCGCTAATCGGCTCAACCACCATCGCTAAAACGGAGCT TAGGGGGGTTGAAAGCCATGGCATGATTTGCTCTAGCATTGAATTAGGCTTCCCTAAAATCAATGATGGCATCTTGGAAT TAGATGAGAGCGTTGGGGAGTTGGTTTTAGGGAAAGAATTAAACGAATACGCCCCTTTCAACACGCATGTTTTAGAAATT TCATTGACTCCCAATCGTGGGGATTGCTTGAGCGTTTTAGGTATTGCCAGAGAAATTAGCGCCTTTTATCACACGCCCCT AAAGCCTATTAAGGCTTTAAATTTTACGCCCAAAAGCGGTTTGATCACGCTTAGTGCGGGTGAAAATATTGAATCGCATC TGGCTTATTATTTGATTTGCAACCATTCATTAAAAACCCCTTTAAATATCAAACTTTCGCTCGCTCATAATAATGCCTTG AGTGAGAACGATCTGAACAATTTCATAGAATTTAGCACGCATTTTAGTGGGGTAATAATGAACGCTTATAGCCTAAATAC AACCCCTATGGATTTGAGCGTGAAAAACGATGAAAACAACCTTGAAAGCGTTTATATCAACCATCAAAAACGCTCCACGA TCGCTATCAAGCATCAAGTTCAAAAAGATTTGAGCGAGTGTTTGCTTTTAGAGGCAAGTTACACCGATCCGATAAGCCTG TCTTTAAAATTACACGCCCTAAAAGATAAAACGCTTCAAAAAGACAACGCCCTTATTTATAGAAGCGCTAGGGGGAGTAA CCCTAATTTATCAGACGGCTTGAATTTTTTAAGCGCTCATTTGAAAGCCACGATTTTAGAAAGCAAACAAACTGAGCATT CTTTAAAAGATCGCACCCTTACATTCCAGCTTGAAGACATTACTGAAATTTTGGGGCTTGCTGTAGAGAAAGAAAAAATT CAAGGCATTTTAAAAAATTTAGGCTTTAAAGTCAGCGTAAAAGAGCCAAACTCAAAACCCCAAATTTTAGAGGTTATTGC GCCAAATTTCAGGCATGACATTAAAACGATCCAAGATATTGCTGAAGAAATTTTGCGCTTTGTAGGGATTGATAATCTAG TCTCAAAGCCCCTTCATTGTGTCAGTAGCAAAAATTCAAACCCCAATTACGACACGCACCGCTTTTTTGAAAACCTTAAA CACAAGGCTCTCGCTTGCGGTTTTAAAGAAGTCATTCATTACGTGTTTTACTCTAAAGAAAAACAGCAAAAATTAGGCTT TGAAGTTTTAGAAGATCCCCTAGAATTGCAAAACCCTATCACAACGGAGTTAAACACCCTAAGGACGAGTCTTGTTTGCG GGCTTTTAGACGCCAGTTTAAGGAATAAAAATTTAGGGTTTAAAAGCATAGCCCTTTATGAAAAGGGGAGCGTGTATAAC TCTAAAAGAGAAGAAATCCAAAAACTAGGCTTTTTAATAAGCGGCTTGCAAAAAAAAGAAAGCTACCCTGATACTAAGGG CAAGGCTTGGGATTTTTACTCTTTTGCCGAATGCGTTTCAAAAGTTATAGGGGATTTCAGCTTGGAAAAACTAACCACTC AAACCCCCATTAACCACCCCTACCAGAGCGCTAAAATCATTCAAAATCATGAAATCATAGGCGTGATCGCTAAAATCCAC CCTAAAGTGATCCAGGAATTGGATTTGTTTGAAAGCTATTACGCTGAGATAGACGCTTTTAAACTCAAACGCCCTGCTAT GCTATTAAAACCCTTTAGCATTTATCCTAGCAGTGTTAGGGATTTGACTCTCATCATTGATGAGAATACCGCTTTTAGTG GGATTAAAAAAGCCCTAAAGGACGCTCAAATCCCTAATTTAAGCGAGATTCTACCCCTTGATATTTTTAAAGAAAGTAAT AATTCCATAGCCTTAAGCGTGCGTTGCGTGATCCATTCTTTAGAAAAAACCCTGAATGATGAAGAGGTCAATTCAGCCGT GCAAAAAGCACTTGAAATTTTAGAAAAAGAATTTAACGCCCGCCTTAAAGGATAA
Upstream 100 bases:
>100_bases CTTTTGGCATGGGGATTGAAAGATTAGCCATGCTGACTTGCCAGATCAATGATTTGCGCAGTTTCTTTGAAACTGATTTG AGAGTGTTGGAGAGCTTTTA
Downstream 100 bases:
>100_bases TATAAAGGATAATATGTGATAGAGCTTGACATTAACGCTAGCGATAAATCGCTCTCACACAGAGCCGTTATTTTTAGCCT GCTCGCTCAAAAACCTTGTT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MKLSINDLNVFVNTPKDIAKLCEDLSRLGLEVESCIPCIAPKNVVVGKILEKAPHKNAEKLSVCQVDVGKEVLQIVCGAK NVAPNQFVPVALNGALIGSTTIAKTELRGVESHGMICSSIELGFPKINDGILELDESVGELVLGKELNEYAPFNTHVLEI SLTPNRGDCLSVLGIAREISAFYHTPLKPIKALNFTPKSGLITLSAGENIESHLAYYLICNHSLKTPLNIKLSLAHNNAL SENDLNNFIEFSTHFSGVIMNAYSLNTTPMDLSVKNDENNLESVYINHQKRSTIAIKHQVQKDLSECLLLEASYTDPISL SLKLHALKDKTLQKDNALIYRSARGSNPNLSDGLNFLSAHLKATILESKQTEHSLKDRTLTFQLEDITEILGLAVEKEKI QGILKNLGFKVSVKEPNSKPQILEVIAPNFRHDIKTIQDIAEEILRFVGIDNLVSKPLHCVSSKNSNPNYDTHRFFENLK HKALACGFKEVIHYVFYSKEKQQKLGFEVLEDPLELQNPITTELNTLRTSLVCGLLDASLRNKNLGFKSIALYEKGSVYN SKREEIQKLGFLISGLQKKESYPDTKGKAWDFYSFAECVSKVIGDFSLEKLTTQTPINHPYQSAKIIQNHEIIGVIAKIH PKVIQELDLFESYYAEIDAFKLKRPAMLLKPFSIYPSSVRDLTLIIDENTAFSGIKKALKDAQIPNLSEILPLDIFKESN NSIALSVRCVIHSLEKTLNDEEVNSAVQKALEILEKEFNARLKG
Sequences:
>Translated_764_residues MKLSINDLNVFVNTPKDIAKLCEDLSRLGLEVESCIPCIAPKNVVVGKILEKAPHKNAEKLSVCQVDVGKEVLQIVCGAK NVAPNQFVPVALNGALIGSTTIAKTELRGVESHGMICSSIELGFPKINDGILELDESVGELVLGKELNEYAPFNTHVLEI SLTPNRGDCLSVLGIAREISAFYHTPLKPIKALNFTPKSGLITLSAGENIESHLAYYLICNHSLKTPLNIKLSLAHNNAL SENDLNNFIEFSTHFSGVIMNAYSLNTTPMDLSVKNDENNLESVYINHQKRSTIAIKHQVQKDLSECLLLEASYTDPISL SLKLHALKDKTLQKDNALIYRSARGSNPNLSDGLNFLSAHLKATILESKQTEHSLKDRTLTFQLEDITEILGLAVEKEKI QGILKNLGFKVSVKEPNSKPQILEVIAPNFRHDIKTIQDIAEEILRFVGIDNLVSKPLHCVSSKNSNPNYDTHRFFENLK HKALACGFKEVIHYVFYSKEKQQKLGFEVLEDPLELQNPITTELNTLRTSLVCGLLDASLRNKNLGFKSIALYEKGSVYN SKREEIQKLGFLISGLQKKESYPDTKGKAWDFYSFAECVSKVIGDFSLEKLTTQTPINHPYQSAKIIQNHEIIGVIAKIH PKVIQELDLFESYYAEIDAFKLKRPAMLLKPFSIYPSSVRDLTLIIDENTAFSGIKKALKDAQIPNLSEILPLDIFKESN NSIALSVRCVIHSLEKTLNDEEVNSAVQKALEILEKEFNARLKG >Mature_764_residues MKLSINDLNVFVNTPKDIAKLCEDLSRLGLEVESCIPCIAPKNVVVGKILEKAPHKNAEKLSVCQVDVGKEVLQIVCGAK NVAPNQFVPVALNGALIGSTTIAKTELRGVESHGMICSSIELGFPKINDGILELDESVGELVLGKELNEYAPFNTHVLEI SLTPNRGDCLSVLGIAREISAFYHTPLKPIKALNFTPKSGLITLSAGENIESHLAYYLICNHSLKTPLNIKLSLAHNNAL SENDLNNFIEFSTHFSGVIMNAYSLNTTPMDLSVKNDENNLESVYINHQKRSTIAIKHQVQKDLSECLLLEASYTDPISL SLKLHALKDKTLQKDNALIYRSARGSNPNLSDGLNFLSAHLKATILESKQTEHSLKDRTLTFQLEDITEILGLAVEKEKI QGILKNLGFKVSVKEPNSKPQILEVIAPNFRHDIKTIQDIAEEILRFVGIDNLVSKPLHCVSSKNSNPNYDTHRFFENLK HKALACGFKEVIHYVFYSKEKQQKLGFEVLEDPLELQNPITTELNTLRTSLVCGLLDASLRNKNLGFKSIALYEKGSVYN SKREEIQKLGFLISGLQKKESYPDTKGKAWDFYSFAECVSKVIGDFSLEKLTTQTPINHPYQSAKIIQNHEIIGVIAKIH PKVIQELDLFESYYAEIDAFKLKRPAMLLKPFSIYPSSVRDLTLIIDENTAFSGIKKALKDAQIPNLSEILPLDIFKESN NSIALSVRCVIHSLEKTLNDEEVNSAVQKALEILEKEFNARLKG
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=819, Percent_Identity=26.984126984127, Blast_Score=212, Evalue=8e-56,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 85137; Mature: 85137
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSINDLNVFVNTPKDIAKLCEDLSRLGLEVESCIPCIAPKNVVVGKILEKAPHKNAEK CEEEEEEEEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCC LSVCQVDVGKEVLQIVCGAKNVAPNQFVPVALNGALIGSTTIAKTELRGVESHGMICSSI EEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCCHHHHHCCCCCCCEEEEEE ELGFPKINDGILELDESVGELVLGKELNEYAPFNTHVLEISLTPNRGDCLSVLGIAREIS ECCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH AFYHTPLKPIKALNFTPKSGLITLSAGENIESHLAYYLICNHSLKTPLNIKLSLAHNNAL HHHCCCCCHHHHCCCCCCCCEEEEECCCCHHHHEEEEEEECCCCCCCCEEEEEEECCCCC SENDLNNFIEFSTHFSGVIMNAYSLNTTPMDLSVKNDENNLESVYINHQKRSTIAIKHQV CCCHHHHHHHHHHHHCEEEEEEEECCCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHH QKDLSECLLLEASYTDPISLSLKLHALKDKTLQKDNALIYRSARGSNPNLSDGLNFLSAH HHHHHHHHEEECCCCCCEEEEEEEEEHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH LKATILESKQTEHSLKDRTLTFQLEDITEILGLAVEKEKIQGILKNLGFKVSVKEPNSKP HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC QILEVIAPNFRHDIKTIQDIAEEILRFVGIDNLVSKPLHCVSSKNSNPNYDTHRFFENLK CHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHH HKALACGFKEVIHYVFYSKEKQQKLGFEVLEDPLELQNPITTELNTLRTSLVCGLLDASL HHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH RNKNLGFKSIALYEKGSVYNSKREEIQKLGFLISGLQKKESYPDTKGKAWDFYSFAECVS CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH KVIGDFSLEKLTTQTPINHPYQSAKIIQNHEIIGVIAKIHPKVIQELDLFESYYAEIDAF HHHCCCHHHHHHCCCCCCCCCCHHHHHCCCCCEEEHHHHCHHHHHHHHHHHHHHHHHHHH KLKRPAMLLKPFSIYPSSVRDLTLIIDENTAFSGIKKALKDAQIPNLSEILPLDIFKESN HCCCCHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCHHHHCCHHEEECCC NSIALSVRCVIHSLEKTLNDEEVNSAVQKALEILEKEFNARLKG CEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKLSINDLNVFVNTPKDIAKLCEDLSRLGLEVESCIPCIAPKNVVVGKILEKAPHKNAEK CEEEEEEEEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCC LSVCQVDVGKEVLQIVCGAKNVAPNQFVPVALNGALIGSTTIAKTELRGVESHGMICSSI EEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCCHHHHHCCCCCCCEEEEEE ELGFPKINDGILELDESVGELVLGKELNEYAPFNTHVLEISLTPNRGDCLSVLGIAREIS ECCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH AFYHTPLKPIKALNFTPKSGLITLSAGENIESHLAYYLICNHSLKTPLNIKLSLAHNNAL HHHCCCCCHHHHCCCCCCCCEEEEECCCCHHHHEEEEEEECCCCCCCCEEEEEEECCCCC SENDLNNFIEFSTHFSGVIMNAYSLNTTPMDLSVKNDENNLESVYINHQKRSTIAIKHQV CCCHHHHHHHHHHHHCEEEEEEEECCCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHH QKDLSECLLLEASYTDPISLSLKLHALKDKTLQKDNALIYRSARGSNPNLSDGLNFLSAH HHHHHHHHEEECCCCCCEEEEEEEEEHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH LKATILESKQTEHSLKDRTLTFQLEDITEILGLAVEKEKIQGILKNLGFKVSVKEPNSKP HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC QILEVIAPNFRHDIKTIQDIAEEILRFVGIDNLVSKPLHCVSSKNSNPNYDTHRFFENLK CHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHH HKALACGFKEVIHYVFYSKEKQQKLGFEVLEDPLELQNPITTELNTLRTSLVCGLLDASL HHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH RNKNLGFKSIALYEKGSVYNSKREEIQKLGFLISGLQKKESYPDTKGKAWDFYSFAECVS CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH KVIGDFSLEKLTTQTPINHPYQSAKIIQNHEIIGVIAKIHPKVIQELDLFESYYAEIDAF HHHCCCHHHHHHCCCCCCCCCCHHHHHCCCCCEEEHHHHCHHHHHHHHHHHHHHHHHHHH KLKRPAMLLKPFSIYPSSVRDLTLIIDENTAFSGIKKALKDAQIPNLSEILPLDIFKESN HCCCCHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCHHHHCCHHEEECCC NSIALSVRCVIHSLEKTLNDEEVNSAVQKALEILEKEFNARLKG CEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]