| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15644679
GI number: 15644679
Start: 46042
End: 48351
Strand: Reverse
Name: Not Available
Synonym: HP0048
Alternate gene names: 15644679
Gene position: 48351-46042 (Counterclockwise)
Preceding gene: 15644680
Following gene: 15644678
Centisome position: 2.9
GC content: 41.77
Gene sequence:
>2310_bases TTGCAACACCTTAATCAAACAGCATGGAAGTTTGCATTGTGTAACGATGCAACTTTATTGAACAAAATCACGCTTTTTGG CGTGGTTCAAGGCGTGGGCATGCGCCCTTTTATTTATACCCTAGCTCAAAAATTAGAGCTTGTGGGCTTTGTGCGTAACA CCCAAGCGGCTTTAGAAATCATCTTACCCGCTCACAAAACAGAGTCTTTTTTAAACGCTCTAAAAAAAGGGTTGCCTCCT TTAGCGTTGGTTGAAAAAATCATTATTAGCCCTTATGATAAGGCACTTCATTTCAATGGTTTTAGGATCTTAGAAAGCAA GAACCACCCCTTGAATTTGCTCAGCCAAATCCCTAAAGATTTAGGCGTGTGCAAGGATTGCTTGAGAGAAATCAGGGATA AAAACTCCCCCTATTTTCATTACGCTTTCAATTCTTGCGCGAAGTGTGGGGCGAGATACAGCCTTTTAAACGCTTTGCCC TATGACAGAGAAAACTCCGCCCTAAAACCCTTCAAACTCTGCGATTTTTGTGCTTCTATCTATCAAGACCCCACCAATAA GCGCTTCCACATTCAAGGCATCAGCTGCAAAAAGTGCGGTATCGCGCTCAATTACAAGCGATTCAAAAACGATGACGCTC TTTTAGAATGCGCTAAAGACATTCAAAAGGGTAAAATCATCGCTCTTAAAGGTTTGGGAGGCTTTGCTCTCTTGTGCGAT GGAAGGAATTTTCAAACCATAGAAAGATTACGGCTTTTAAAAAACCGCCCCCTAAAGCCTTTCGCACTCATGTTTAAAGA TTTGAACACAGCCAAACAGCATGCGTTTTTGAACGCGTTAGAATGCGAGAGCTTAATTTCTACAAGCGCCCCCATTCTTT TAGCGCGTAAAAAACCTGATATAAAATTAGCCCCCAATATCGCTAAAAACTCCCCCTTTTATGGCGTGATTTTGCCCTAT ACCCCTTTGCATGCTTTATTGCTGGATTTATTGGATTTCCCTATTGTGTTCACGAGCGCGAATTTCAGCTCCCTCCCTTT AGCGAGCGATGAGGCTGAGATTGACGCCTTGAGTTTCATTTTTGATTTTAAGCTCACGCACAACCGCGCTATCATCCATA GGATTGATGACAGCATCGTGCAGCATGTGGATAATGCCATTCGCCCCATGCGTTTGGCTAGGGGGTTTGCCCCCCTTTAC CTCACCTTGCCTAAACGCTCTAATGGTTCGCCAAAAAAGATTTTAGCGCTTGGAGCGCAACAAAAAGGGCATTTTAGCTT ATTGGATAGCGGAACTTCCATTCTTTTACTCTCGCCTTTTTGTGGGGATTTGAGCGTTTTAGAAAATGAAAAACACTTTA AAGAAACTTTGAATTTTTTCTTAAAAACCTATGATTTTAAACCCACCATCTTAGCTTGCGACAAGCATCAAAACTACACC ACCACTCAAATGGCTTTTGATTTTAATACGCCCTTGTTGCAAGTCCAGCACCACCATGCCCACTTTTTAGCGAGCGTCTT AGACGCATTGTTACAAGATCCGCATTTAAATCACCCCTTTATAGGCATTGTCTGGGATGGGAGTGGGGCTTATGAAAATA AGATTTATGGGGCGGAGTGTTTTGTGGGGGATTTGGAACGCATTGAAGAAACCGCCAGGTTTGAAGAATTTTGGCTTTTA GGGGGGCAAAAAGCGATCAAAGAGCCTAGACGCCTGGTTTTAGAAATCGCTTTAAAACACCAACTCAACAAGCTTTTAAA GCGCGTTCAAAAGCATTTTAAAGAAGACGAATTAGAAATTTTCCAACAAATGCATGACAAAAAAATTCAAAGCATAGCCA CCAATTCCATAGGGCGTTTGTTTGATATAGTAGCGTTTAGTTTGGATTTAACAGGAACGATTAGCTTTGAAGCAGAGAGC GGGCAGGTTTTAGAAAATCTAGCCTTACAAAGCGATGAGATCGCTTTTTACCCTTTTGAAATCAAAAACAGCGTGGTGTG TTTGAAAGAATTTTATCAAGCGTTTGAAAAGGATTTGGGCGTTTTAGAGCCTGAACGCATCGCTAAGAAATTTTTTAACA GCCTAGTAGAAATCATTACCGCTTTAATCGTGCCTTTTAAAGAGCATGTGGTGGTGTGCAGTGGGGGCGTGTTTTGCAAC CAATTATTATGCGAACAATTAGCCAAACGATTGAGAGGGCTAAAGAGGCAGTATTTTTTCCACAAGCATTTCCCCCCTAA TGACAGCAGTATCCCTATCGGTCAAGCCTTAATGGCGTATTTCAACCCTACAATCATCAAAAAAGGATAA
Upstream 100 bases:
>100_bases GCAATAACGCTTTAATCGTGCCCACTTACAACGACCCTAAAGACGCGCTCATTTTAGAAACCTTGAAACAACACACGCCC TTAGAAGTGATAGGGGTTGA
Downstream 100 bases:
>100_bases AAATGGATAGCGTAACTCTAGCATGCGGGAACGGAGGGAAAGAAACAAACGCTTTGATTGAGCGAGTCTTTATGCCCTAT TTAAAAGAATGGATTGTTGC
Product: transcriptional regulator (hypF)
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MQHLNQTAWKFALCNDATLLNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPAHKTESFLNALKKGLPP LALVEKIIISPYDKALHFNGFRILESKNHPLNLLSQIPKDLGVCKDCLREIRDKNSPYFHYAFNSCAKCGARYSLLNALP YDRENSALKPFKLCDFCASIYQDPTNKRFHIQGISCKKCGIALNYKRFKNDDALLECAKDIQKGKIIALKGLGGFALLCD GRNFQTIERLRLLKNRPLKPFALMFKDLNTAKQHAFLNALECESLISTSAPILLARKKPDIKLAPNIAKNSPFYGVILPY TPLHALLLDLLDFPIVFTSANFSSLPLASDEAEIDALSFIFDFKLTHNRAIIHRIDDSIVQHVDNAIRPMRLARGFAPLY LTLPKRSNGSPKKILALGAQQKGHFSLLDSGTSILLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKPTILACDKHQNYT TTQMAFDFNTPLLQVQHHHAHFLASVLDALLQDPHLNHPFIGIVWDGSGAYENKIYGAECFVGDLERIEETARFEEFWLL GGQKAIKEPRRLVLEIALKHQLNKLLKRVQKHFKEDELEIFQQMHDKKIQSIATNSIGRLFDIVAFSLDLTGTISFEAES GQVLENLALQSDEIAFYPFEIKNSVVCLKEFYQAFEKDLGVLEPERIAKKFFNSLVEIITALIVPFKEHVVVCSGGVFCN QLLCEQLAKRLRGLKRQYFFHKHFPPNDSSIPIGQALMAYFNPTIIKKG
Sequences:
>Translated_769_residues MQHLNQTAWKFALCNDATLLNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPAHKTESFLNALKKGLPP LALVEKIIISPYDKALHFNGFRILESKNHPLNLLSQIPKDLGVCKDCLREIRDKNSPYFHYAFNSCAKCGARYSLLNALP YDRENSALKPFKLCDFCASIYQDPTNKRFHIQGISCKKCGIALNYKRFKNDDALLECAKDIQKGKIIALKGLGGFALLCD GRNFQTIERLRLLKNRPLKPFALMFKDLNTAKQHAFLNALECESLISTSAPILLARKKPDIKLAPNIAKNSPFYGVILPY TPLHALLLDLLDFPIVFTSANFSSLPLASDEAEIDALSFIFDFKLTHNRAIIHRIDDSIVQHVDNAIRPMRLARGFAPLY LTLPKRSNGSPKKILALGAQQKGHFSLLDSGTSILLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKPTILACDKHQNYT TTQMAFDFNTPLLQVQHHHAHFLASVLDALLQDPHLNHPFIGIVWDGSGAYENKIYGAECFVGDLERIEETARFEEFWLL GGQKAIKEPRRLVLEIALKHQLNKLLKRVQKHFKEDELEIFQQMHDKKIQSIATNSIGRLFDIVAFSLDLTGTISFEAES GQVLENLALQSDEIAFYPFEIKNSVVCLKEFYQAFEKDLGVLEPERIAKKFFNSLVEIITALIVPFKEHVVVCSGGVFCN QLLCEQLAKRLRGLKRQYFFHKHFPPNDSSIPIGQALMAYFNPTIIKKG >Mature_769_residues MQHLNQTAWKFALCNDATLLNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPAHKTESFLNALKKGLPP LALVEKIIISPYDKALHFNGFRILESKNHPLNLLSQIPKDLGVCKDCLREIRDKNSPYFHYAFNSCAKCGARYSLLNALP YDRENSALKPFKLCDFCASIYQDPTNKRFHIQGISCKKCGIALNYKRFKNDDALLECAKDIQKGKIIALKGLGGFALLCD GRNFQTIERLRLLKNRPLKPFALMFKDLNTAKQHAFLNALECESLISTSAPILLARKKPDIKLAPNIAKNSPFYGVILPY TPLHALLLDLLDFPIVFTSANFSSLPLASDEAEIDALSFIFDFKLTHNRAIIHRIDDSIVQHVDNAIRPMRLARGFAPLY LTLPKRSNGSPKKILALGAQQKGHFSLLDSGTSILLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKPTILACDKHQNYT TTQMAFDFNTPLLQVQHHHAHFLASVLDALLQDPHLNHPFIGIVWDGSGAYENKIYGAECFVGDLERIEETARFEEFWLL GGQKAIKEPRRLVLEIALKHQLNKLLKRVQKHFKEDELEIFQQMHDKKIQSIATNSIGRLFDIVAFSLDLTGTISFEAES GQVLENLALQSDEIAFYPFEIKNSVVCLKEFYQAFEKDLGVLEPERIAKKFFNSLVEIITALIVPFKEHVVVCSGGVFCN QLLCEQLAKRLRGLKRQYFFHKHFPPNDSSIPIGQALMAYFNPTIIKKG
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=755, Percent_Identity=32.1854304635762, Blast_Score=294, Evalue=1e-80,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 87040; Mature: 87040
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQHLNQTAWKFALCNDATLLNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEI CCCCHHHHHEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHE ILPAHKTESFLNALKKGLPPLALVEKIIISPYDKALHFNGFRILESKNHPLNLLSQIPKD EECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEECCCEEEEECCCCCHHHHHHCHHH LGVCKDCLREIRDKNSPYFHYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCDFCASI HHHHHHHHHHHHCCCCCEEEEHHHHHHHHCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH YQDPTNKRFHIQGISCKKCGIALNYKRFKNDDALLECAKDIQKGKIIALKGLGGFALLCD HCCCCCCEEEEECCCCCCCCEEEEHHHHCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEC GRNFQTIERLRLLKNRPLKPFALMFKDLNTAKQHAFLNALECESLISTSAPILLARKKPD CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC IKLAPNIAKNSPFYGVILPYTPLHALLLDLLDFPIVFTSANFSSLPLASDEAEIDALSFI CEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHH FDFKLTHNRAIIHRIDDSIVQHVDNAIRPMRLARGFAPLYLTLPKRSNGSPKKILALGAQ EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCC QKGHFSLLDSGTSILLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKPTILACDKHQNYT CCCCEEEECCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCE TTQMAFDFNTPLLQVQHHHAHFLASVLDALLQDPHLNHPFIGIVWDGSGAYENKIYGAEC EEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHH FVGDLERIEETARFEEFWLLGGQKAIKEPRRLVLEIALKHQLNKLLKRVQKHFKEDELEI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FQQMHDKKIQSIATNSIGRLFDIVAFSLDLTGTISFEAESGQVLENLALQSDEIAFYPFE HHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEEEEECCCCHHHHHHHCCCCCEEEEEEE IKNSVVCLKEFYQAFEKDLGVLEPERIAKKFFNSLVEIITALIVPFKEHVVVCSGGVFCN CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH QLLCEQLAKRLRGLKRQYFFHKHFPPNDSSIPIGQALMAYFNPTIIKKG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEECC >Mature Secondary Structure MQHLNQTAWKFALCNDATLLNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEI CCCCHHHHHEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHE ILPAHKTESFLNALKKGLPPLALVEKIIISPYDKALHFNGFRILESKNHPLNLLSQIPKD EECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEECCCEEEEECCCCCHHHHHHCHHH LGVCKDCLREIRDKNSPYFHYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCDFCASI HHHHHHHHHHHHCCCCCEEEEHHHHHHHHCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH YQDPTNKRFHIQGISCKKCGIALNYKRFKNDDALLECAKDIQKGKIIALKGLGGFALLCD HCCCCCCEEEEECCCCCCCCEEEEHHHHCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEC GRNFQTIERLRLLKNRPLKPFALMFKDLNTAKQHAFLNALECESLISTSAPILLARKKPD CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC IKLAPNIAKNSPFYGVILPYTPLHALLLDLLDFPIVFTSANFSSLPLASDEAEIDALSFI CEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHH FDFKLTHNRAIIHRIDDSIVQHVDNAIRPMRLARGFAPLYLTLPKRSNGSPKKILALGAQ EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCC QKGHFSLLDSGTSILLLSPFCGDLSVLENEKHFKETLNFFLKTYDFKPTILACDKHQNYT CCCCEEEECCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCE TTQMAFDFNTPLLQVQHHHAHFLASVLDALLQDPHLNHPFIGIVWDGSGAYENKIYGAEC EEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHH FVGDLERIEETARFEEFWLLGGQKAIKEPRRLVLEIALKHQLNKLLKRVQKHFKEDELEI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FQQMHDKKIQSIATNSIGRLFDIVAFSLDLTGTISFEAESGQVLENLALQSDEIAFYPFE HHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEEEEECCCCHHHHHHHCCCCCEEEEEEE IKNSVVCLKEFYQAFEKDLGVLEPERIAKKFFNSLVEIITALIVPFKEHVVVCSGGVFCN CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH QLLCEQLAKRLRGLKRQYFFHKHFPPNDSSIPIGQALMAYFNPTIIKKG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]