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The map label for this gene is nusB

Identifier: 15618897

GI number: 15618897

Start: 1139013

End: 1139495

Strand: Reverse

Name: nusB

Synonym: CPn0989

Alternate gene names: 15618897

Gene position: 1139495-1139013 (Counterclockwise)

Preceding gene: 15618903

Following gene: 15618896

Centisome position: 92.62

GC content: 37.27

Gene sequence:

>483_bases
ATGGCCACATTGAGTCCTGAAAAATTCTCGGGGTCCCCTATTTCGATCTCGAAGGAATTCCCTCAGCAAAAGATGAGAGA
AATCATCTTGCAGATGTTGTATGCCCTAGATATGGCTCCTTCAGCAGAGGACAGTTTAGTTCCTTTGCTTATGTCACAAA
CTGCGGTGTCTCAAAAACACGTACTCGTAGCTTTAAACCAGACTAAAAGCATTTTAGAAAAATCACAAGAATTGGATCTA
ATTATTGGGAATGCTCTTAAAAATAAGTCTTTTGATAGTTTAGATCTTGTAGAAAAAAATGTCCTACGCCTGACTCTCTT
TGAGCATTTTTACAGCCCACCCATTAACAAGGCCATTCTTATTGCAGAAGCAATTCGTCTAGTTAAAAAGTTTAGTTATT
CAGAAGCCTGTCCTTTCATTCAGGCGATTTTGAATGACATTTTCACAGATTCATCTCTAAATGAAAATTCTTTATCAATC
TGA

Upstream 100 bases:

>100_bases
ACTTTCTAATAGATAACCTTGTTTCTTTCTCACAACTCCTTAGCTAAGGACCTCTTTAGCAGTTAAATGTGTATTATTAA
CTATTTTTTGGTTGCTTGTC

Downstream 100 bases:

>100_bases
TTAATTTAGACCAAGGGATTCTAAAAATGAAAGAAGCTGCGCCTATGCATTTTCCTTTTCCTGTTCGTCGTAGTGTGTGG
CTGAATAGGTATTCCACTTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQELDL
IIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENSLSI

Sequences:

>Translated_160_residues
MATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQELDL
IIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENSLSI
>Mature_159_residues
ATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILEKSQELDLI
IGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENSLSI

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NUSB_CHLPN (Q9Z6S0)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   B81530
- PIR:   B86614
- PIR:   F72010
- RefSeq:   NP_225183.1
- RefSeq:   NP_301044.1
- RefSeq:   NP_445404.1
- RefSeq:   NP_877298.1
- ProteinModelPortal:   Q9Z6S0
- SMR:   Q9Z6S0
- GeneID:   1467705
- GeneID:   895514
- GeneID:   919757
- GeneID:   963315
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0866
- KEGG:   cpj:CPj0989
- KEGG:   cpn:CPn0989
- KEGG:   cpt:CpB1026
- TIGR:   CP_0866
- HOGENOM:   HBG413881
- OMA:   MKTYRRQ
- ProtClustDB:   PRK00202
- BioCyc:   CPNE115711:CP_0866-MONOMER
- BioCyc:   CPNE115713:CPN0989-MONOMER
- BioCyc:   CPNE138677:CPJ0989-MONOMER
- BioCyc:   CPNE182082:CPB1026-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17874; Mature: 17743

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKH
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
VLVALNQTKSILEKSQELDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAIL
EEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
IAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENSLSI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKH
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
VLVALNQTKSILEKSQELDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAIL
EEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
IAEAIRLVKKFSYSEACPFIQAILNDIFTDSSLNENSLSI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362