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The map label for this gene is hctA

Identifier: 15618795

GI number: 15618795

Start: 1010905

End: 1011276

Strand: Reverse

Name: hctA

Synonym: CPn0886

Alternate gene names: 15618795

Gene position: 1011276-1010905 (Counterclockwise)

Preceding gene: 15618797

Following gene: 15618794

Centisome position: 82.2

GC content: 38.17

Gene sequence:

>372_bases
ATGGCGCTAAAAGATACGGCAAAAAAAATGAAAGACCTGCTGGATAGCATCCAACACGACTTAGCTAAAGCAGAGAAAGG
AAACAAGGCAGCAGCTCAAAGAGTACGCACAGACTCTATAAAATTAGAAAAAGTTGCGAAACTTTACAGAAAAGAATCTA
TAAAAGCAGAGAAATCTGGGTTATTAAAACGTAAGCCATCAACTAAGGCTCCTGCCAAAGTAAAAAAAACTGCGGAAAAA
AAAGCCCCTAAAAAAAGCTCTGCTGCTGCAGCTAAAACTAGCAAAGCAGTCAAAGCTTCTAAACCTGCATCTAAAAAGAC
AGCCGCAAAAAAAGTTAAAAAACCTTCCAAAGCACGCGGATTTAGAAAATAA

Upstream 100 bases:

>100_bases
ATTTTCTCTAAAAAATGGTTGCATGAATTTGAACAAACAAACTAATTAAAAATTAAAACAAGTAAAAATAGTTTAAAACA
GCGACTAGAGGACGCTTTTC

Downstream 100 bases:

>100_bases
TTCGCCTTAGCTTGATTTCGTTTAGAGGGTGGGTAATTTTCTACTCATCCTCTTTTTTATGCCCAAATTTTTCTCTGTGC
TACCTAGGAGTTCTTCCTTA

Product: histone-like developmental protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MALKDTAKKMKDLLDSIQHDLAKAEKGNKAAAQRVRTDSIKLEKVAKLYRKESIKAEKSGLLKRKPSTKAPAKVKKTAEK
KAPKKSSAAAAKTSKAVKASKPASKKTAAKKVKKPSKARGFRK

Sequences:

>Translated_123_residues
MALKDTAKKMKDLLDSIQHDLAKAEKGNKAAAQRVRTDSIKLEKVAKLYRKESIKAEKSGLLKRKPSTKAPAKVKKTAEK
KAPKKSSAAAAKTSKAVKASKPASKKTAAKKVKKPSKARGFRK
>Mature_122_residues
ALKDTAKKMKDLLDSIQHDLAKAEKGNKAAAQRVRTDSIKLEKVAKLYRKESIKAEKSGLLKRKPSTKAPAKVKKTAEKK
APKKSSAAAAKTSKAVKASKPASKKTAAKKVKKPSKARGFRK

Specific function: Might have a role analogous to that of eukaryotic histone proteins

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone H1/H5 family. HCT subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HCT1_CHLPN (Q9Z720)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   B72023
- PIR:   D86601
- RefSeq:   NP_225081.1
- RefSeq:   NP_300943.1
- RefSeq:   NP_445517.1
- RefSeq:   NP_877188.1
- GeneID:   1467595
- GeneID:   895684
- GeneID:   919650
- GeneID:   963448
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0980
- KEGG:   cpn:CPn0886
- KEGG:   cpt:CpB0916
- TIGR:   CP_0980
- OMA:   RTDSIKL
- ProtClustDB:   CLSK871574
- BioCyc:   CPNE115711:CP_0980-MONOMER
- BioCyc:   CPNE115713:CPN0886-MONOMER
- BioCyc:   CPNE138677:CPJ0886-MONOMER
- BioCyc:   CPNE182082:CPB0916-MONOMER
- InterPro:   IPR010886

Pfam domain/function: PF07432 Hc1

EC number: NA

Molecular weight: Translated: 13339; Mature: 13208

Theoretical pI: Translated: 11.45; Mature: 11.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKDTAKKMKDLLDSIQHDLAKAEKGNKAAAQRVRTDSIKLEKVAKLYRKESIKAEKSG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKRKPSTKAPAKVKKTAEKKAPKKSSAAAAKTSKAVKASKPASKKTAAKKVKKPSKARG
HHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHCCC
FRK
CCC
>Mature Secondary Structure 
ALKDTAKKMKDLLDSIQHDLAKAEKGNKAAAQRVRTDSIKLEKVAKLYRKESIKAEKSG
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKRKPSTKAPAKVKKTAEKKAPKKSSAAAAKTSKAVKASKPASKKTAAKKVKKPSKARG
HHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHCCC
FRK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362