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The map label for this gene is ssf [C]

Identifier: 15607060

GI number: 15607060

Start: 1481860

End: 1483323

Strand: Direct

Name: ssf [C]

Synonym: aq_2106

Alternate gene names: 15607060

Gene position: 1481860-1483323 (Clockwise)

Preceding gene: 15607057

Following gene: 15607061

Centisome position: 95.52

GC content: 49.59

Gene sequence:

>1464_bases
GTGCCGCTTCCTTCATCAGTATGGCGGAGCACTCTACGCCCTCGGGTACGACGACTCGCCTACATAATGGGATGGACGGG
TGGATACGTTCTGCTCGCACTCCTGATAGCACCTTACCTCAGGAAGTTTGGAAAGTTCACAGTTCCCGACTTCATAGCGG
AAAGGTACGAGAGTAACTTCGCAAGACTCGTTGCGCTTATAATCGCGATAATAATCAGCTTCACCTACATGGTCGGTCAG
GTTGCCGGTGTCGGTATCATAATGGGAAGACTCTTCGGAGTTCCCTTCGAAATAGGTATAGCGATCGGAATGATAGTCAT
AATCGCAACCACAGTTCTGGGCGGTATGAAATCCATCACGTGGACTCAGGTTGCCCAGTACATCGTTCTTATAACAGCTT
ACCTCTTACCGGTTTCCCTTTTAGCAATGCAGTGGTTCGGAATTCCCCTGCCTCAGTTTCTTTACGGTAACGTTCTCCAG
TGGATCGTAGACCTTGAAAAACAACACGGTATCTCTCCCCACTACATAGAACCTTACGTTAAGTTCAACATGATTCAATT
CCTCGCTTTGATGTTCGTCCTGATGGCTGGAACTGCGGCACTTCCTCACGTTCTTATGAGGTTCTTTACAACACCTTCGG
TTAAGGACGCAAGGTGGAGTGCGGGATGGGCACTCTTCTTCATAGCCATACTCTACTTAACCGCTCCTGCGTACGCAGCC
TTTGCAAGGTACGTCGTCCTCAAAGACGTCGTCGGTAAGCCCATAGATCAGCTTCCCGCCTGGGCACAGAAGTGGGCCGA
AACGGGACTCTTTAAAGTAATAGACCAAAACGGTGACGGCATAATCCAGTGGGCTGAACTTCAGCTCCATAGGGACATAG
TCGTTCTGGCAACTCCCGAAATTGCGGGGCTCAGCTTACTCGTAGGATACTTCGTAATGGCAGGTGGTCTTGCAGCGGCA
CTCTCCACTGCGGACGGACTGCTACTCGTTATAGCGGCAGCGGTTTCCAATGACCTCTACGCTAAGATGATCAATCCGAA
CGCACCCGAGAAAAAGATCGTTATGCTCGGTAAGATAGCGGTTGCAGTAGCGGGAGTGATAGGTGGTTTCGTAGCAGCAA
TGAAGATCGGATTCATCGTTCAAATAGTCGCTTGGGCGTTCTCACTGGCAACGGCATCCTTCTTCCCGGCATTGGTTCTC
GGTATATTCTGGAAGCGTCTGAACAAGGAAGGTGCTATAGCAGGTATGGTTGCGGGACTGCTCGTAACGATTATCTACAT
TTATCTCAACAAGACTCAAGGTTTCTCCATACTGGGAATACAGCACACCGCATCTGGTGTATTCGGACTACTGGTTAACC
TGATAGTCTCCTACATAGTCACGATGATGACACCACCTCCCTCCGAAAGGGTACAGAAACTCGTTGAGGACATCAGGTAT
CCCAAGAAGATTCACGAAGTATGA

Upstream 100 bases:

>100_bases
AGCTATTTACAACAGGGCGACCGAAGCGGAAGAGTTTTACGTACCGGTATGAGAATTCCCGCCTTCTGGAACGGAATGGC
AGTAGCCGCTGACTGGATGA

Downstream 100 bases:

>100_bases
TAGTAGACGTCAAGGAGTTCTTACAGACACACTACCCCTTTTCCTCCCTCCCCCCTTCTTCTTTAGAAAATCTTTCTAAA
GTCATAAAGGTTAAGTACTA

Product: SSF family Na(+)/solute symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MPLPSSVWRSTLRPRVRRLAYIMGWTGGYVLLALLIAPYLRKFGKFTVPDFIAERYESNFARLVALIIAIIISFTYMVGQ
VAGVGIIMGRLFGVPFEIGIAIGMIVIIATTVLGGMKSITWTQVAQYIVLITAYLLPVSLLAMQWFGIPLPQFLYGNVLQ
WIVDLEKQHGISPHYIEPYVKFNMIQFLALMFVLMAGTAALPHVLMRFFTTPSVKDARWSAGWALFFIAILYLTAPAYAA
FARYVVLKDVVGKPIDQLPAWAQKWAETGLFKVIDQNGDGIIQWAELQLHRDIVVLATPEIAGLSLLVGYFVMAGGLAAA
LSTADGLLLVIAAAVSNDLYAKMINPNAPEKKIVMLGKIAVAVAGVIGGFVAAMKIGFIVQIVAWAFSLATASFFPALVL
GIFWKRLNKEGAIAGMVAGLLVTIIYIYLNKTQGFSILGIQHTASGVFGLLVNLIVSYIVTMMTPPPSERVQKLVEDIRY
PKKIHEV

Sequences:

>Translated_487_residues
MPLPSSVWRSTLRPRVRRLAYIMGWTGGYVLLALLIAPYLRKFGKFTVPDFIAERYESNFARLVALIIAIIISFTYMVGQ
VAGVGIIMGRLFGVPFEIGIAIGMIVIIATTVLGGMKSITWTQVAQYIVLITAYLLPVSLLAMQWFGIPLPQFLYGNVLQ
WIVDLEKQHGISPHYIEPYVKFNMIQFLALMFVLMAGTAALPHVLMRFFTTPSVKDARWSAGWALFFIAILYLTAPAYAA
FARYVVLKDVVGKPIDQLPAWAQKWAETGLFKVIDQNGDGIIQWAELQLHRDIVVLATPEIAGLSLLVGYFVMAGGLAAA
LSTADGLLLVIAAAVSNDLYAKMINPNAPEKKIVMLGKIAVAVAGVIGGFVAAMKIGFIVQIVAWAFSLATASFFPALVL
GIFWKRLNKEGAIAGMVAGLLVTIIYIYLNKTQGFSILGIQHTASGVFGLLVNLIVSYIVTMMTPPPSERVQKLVEDIRY
PKKIHEV
>Mature_486_residues
PLPSSVWRSTLRPRVRRLAYIMGWTGGYVLLALLIAPYLRKFGKFTVPDFIAERYESNFARLVALIIAIIISFTYMVGQV
AGVGIIMGRLFGVPFEIGIAIGMIVIIATTVLGGMKSITWTQVAQYIVLITAYLLPVSLLAMQWFGIPLPQFLYGNVLQW
IVDLEKQHGISPHYIEPYVKFNMIQFLALMFVLMAGTAALPHVLMRFFTTPSVKDARWSAGWALFFIAILYLTAPAYAAF
ARYVVLKDVVGKPIDQLPAWAQKWAETGLFKVIDQNGDGIIQWAELQLHRDIVVLATPEIAGLSLLVGYFVMAGGLAAAL
STADGLLLVIAAAVSNDLYAKMINPNAPEKKIVMLGKIAVAVAGVIGGFVAAMKIGFIVQIVAWAFSLATASFFPALVLG
IFWKRLNKEGAIAGMVAGLLVTIIYIYLNKTQGFSILGIQHTASGVFGLLVNLIVSYIVTMMTPPPSERVQKLVEDIRYP
KKIHEV

Specific function: Unknown

COG id: COG4147

COG function: function code R; Predicted symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

Organism=Homo sapiens, GI310128183, Length=491, Percent_Identity=24.847250509165, Blast_Score=100, Evalue=4e-21,
Organism=Escherichia coli, GI1790503, Length=434, Percent_Identity=26.2672811059908, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1787251, Length=473, Percent_Identity=24.5243128964059, Blast_Score=86, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734
- InterPro:   IPR019899 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 53418; Mature: 53287

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00018 EF_HAND_1 ; PS00457 NA_SOLUT_SYMP_2 ; PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHCC
>Mature Secondary Structure 
PLPSSVWRSTLRPRVRRLAYIMGWTGGYVLLALLIAPYLRKFGKFTVPDFIAERYESNF
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH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CHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1356967 [H]