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The map label for this gene is nfeD [H]

Identifier: 15606868

GI number: 15606868

Start: 1281207

End: 1282484

Strand: Direct

Name: nfeD [H]

Synonym: aq_1820

Alternate gene names: 15606868

Gene position: 1281207-1282484 (Clockwise)

Preceding gene: 15606867

Following gene: 15606869

Centisome position: 82.59

GC content: 45.62

Gene sequence:

>1278_bases
ATGAAGATAATTCTACTTTCACTCTTCTGGGTATTCTTTTCCTTCGGAAAGATATTCGTAGCCCAGTGGGAAGGCCCCAT
AACGCCCACTACCGCTGACTACGTTGAAAGGACTATACAGAAAGCACAGAAGGAAGGGGGAACGCTGTACATACTTCTCT
TAAACACTCCCGGCGGACTTGTGGAGAGTATGAGGAAGATAATTCAGAGTTTCGAGACCGCTCCCTTTCCCATAGTAGTT
TATGTTTATCCGCCGGGCGGGAGAGCTGCTTCAGCAGGGGCAATTATAACTATAGCCGCGGACATAGCCGCGATGGCCCC
GGGCACCAATATAGGCGCGGCACACCCGGTCCTTGCAACACCGCAGGGTCGCGAAAAAAAGGAAAAGGGAAAGGACGTTA
TGATGGAAAAGGTACTACAGGACATGCTCGCCTTCGTAAGAGCCATAGCCAAAGAAAAGGGAAGAAACGTAAAAGTAGTT
GAAAAGATGGTAAAGGAGAGTCTTTCCCTTTCTGCGGAAGAAGCTCTGAAAAAGGGAGTAATAGACCTGATAGCGTATAA
CCTTGAGGACTTACTCACGAAACTAGAGGGTAAAAAAGTTAAAAAACTTAACGCGGTTTACGAAATAAGAACAAAGGGCA
AAGAAGTAGTGTTTTTAAAACCGAGTCTGAGAGAAGAATTTCTGAAAATCATTACAAATCCGACAGTGGCTTACCTCCTG
CTCATGCTTGGATTTTACGGAATATTCTTCGAACTTTACAACCCTGGTGCCATAATCCCCGGTGTTCTGGGGGCTATATG
TCTGCTCCTCGGTCTGTACGGTCTGAGCGTTATATCTATAAACTGGCTTGCCTTATTGCTTATAGTCCTCGGGATACTCT
TTTTTGTCCTTGAACTCCTTACTCCAACTTTCGGGGCCCTTGCCCTCGGAGGTGCTATTTCCATACTCCTAGGCTCACTT
TTCCTCGTAGAAGAGGGTTCACCGTACGGAGAAATCCCAAAGCAATTAATAATCAGTGTTTCCATTTTTAGTGCCATTTT
CTTCCTCGGGGTAGGTTATCTTGGCTTGAAGGCTCAAAAGAGGAAGAAGCTCACGGGAATTGAGGGGATGATAGGAGAAG
AGGGAGAGGCTATTGTAGACTTTAAAAACGGGAGGGGAAAGGTATTCGTTCACGGGGAGATATGGGACGCTGTATCGGAG
GACGATATAAAGAAAGGGGATACGGTTAAAGTAGTAGGCGCTAAAGGTCTTAAATTAATCGTTAAGAAATCTTCGTGA

Upstream 100 bases:

>100_bases
ATAGAAAAAGTAGTTCTCGCAAGGGCGGTAAAGTGGCACCTTGAGGACAAGATACTCGTCTACAATGGAAAGACAGTAGT
TTTTGAATGAAAATTTAATT

Downstream 100 bases:

>100_bases
AAGGGCTATATTTATTCCTTAATGGAACTGGATCTCATAAGTTACGAACTTGACGAGAAAACTAAGGAAGGAATAGAGAA
GGTTGTTGAGAAGTTCTTTA

Product: nodulation competitiveness protein NfeD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MKIILLSLFWVFFSFGKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNTPGGLVESMRKIIQSFETAPFPIVV
YVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVLATPQGREKKEKGKDVMMEKVLQDMLAFVRAIAKEKGRNVKVV
EKMVKESLSLSAEEALKKGVIDLIAYNLEDLLTKLEGKKVKKLNAVYEIRTKGKEVVFLKPSLREEFLKIITNPTVAYLL
LMLGFYGIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILFFVLELLTPTFGALALGGAISILLGSL
FLVEEGSPYGEIPKQLIISVSIFSAIFFLGVGYLGLKAQKRKKLTGIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSE
DDIKKGDTVKVVGAKGLKLIVKKSS

Sequences:

>Translated_425_residues
MKIILLSLFWVFFSFGKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNTPGGLVESMRKIIQSFETAPFPIVV
YVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVLATPQGREKKEKGKDVMMEKVLQDMLAFVRAIAKEKGRNVKVV
EKMVKESLSLSAEEALKKGVIDLIAYNLEDLLTKLEGKKVKKLNAVYEIRTKGKEVVFLKPSLREEFLKIITNPTVAYLL
LMLGFYGIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILFFVLELLTPTFGALALGGAISILLGSL
FLVEEGSPYGEIPKQLIISVSIFSAIFFLGVGYLGLKAQKRKKLTGIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSE
DDIKKGDTVKVVGAKGLKLIVKKSS
>Mature_425_residues
MKIILLSLFWVFFSFGKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNTPGGLVESMRKIIQSFETAPFPIVV
YVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVLATPQGREKKEKGKDVMMEKVLQDMLAFVRAIAKEKGRNVKVV
EKMVKESLSLSAEEALKKGVIDLIAYNLEDLLTKLEGKKVKKLNAVYEIRTKGKEVVFLKPSLREEFLKIITNPTVAYLL
LMLGFYGIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILFFVLELLTPTFGALALGGAISILLGSL
FLVEEGSPYGEIPKQLIISVSIFSAIFFLGVGYLGLKAQKRKKLTGIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSE
DDIKKGDTVKVVGAKGLKLIVKKSS

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002810
- InterPro:   IPR002825 [H]

Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 46154; Mature: 46154

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIILLSLFWVFFSFGKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNTPGGL
CEEHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHH
VESMRKIIQSFETAPFPIVVYVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVLAT
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCC
PQGREKKEKGKDVMMEKVLQDMLAFVRAIAKEKGRNVKVVEKMVKESLSLSAEEALKKGV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
IDLIAYNLEDLLTKLEGKKVKKLNAVYEIRTKGKEVVFLKPSLREEFLKIITNPTVAYLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCHHHHHH
LMLGFYGIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILFFVLELL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPTFGALALGGAISILLGSLFLVEEGSPYGEIPKQLIISVSIFSAIFFLGVGYLGLKAQK
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RKKLTGIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSEDDIKKGDTVKVVGAKGLKLI
HHHHCCCCCCCCCCCCEEEEEECCCEEEEEEEHHHCCCCCCCCCCCCEEEEEECCCEEEE
VKKSS
EECCC
>Mature Secondary Structure
MKIILLSLFWVFFSFGKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNTPGGL
CEEHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHH
VESMRKIIQSFETAPFPIVVYVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHPVLAT
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCC
PQGREKKEKGKDVMMEKVLQDMLAFVRAIAKEKGRNVKVVEKMVKESLSLSAEEALKKGV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
IDLIAYNLEDLLTKLEGKKVKKLNAVYEIRTKGKEVVFLKPSLREEFLKIITNPTVAYLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCHHHHHH
LMLGFYGIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILFFVLELL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPTFGALALGGAISILLGSLFLVEEGSPYGEIPKQLIISVSIFSAIFFLGVGYLGLKAQK
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
RKKLTGIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSEDDIKKGDTVKVVGAKGLKLI
HHHHCCCCCCCCCCCCEEEEEECCCEEEEEEEHHHCCCCCCCCCCCCEEEEEECCCEEEE
VKKSS
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]