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The map label for this gene is cydB [H]

Identifier: 15606555

GI number: 15606555

Start: 965268

End: 966368

Strand: Direct

Name: cydB [H]

Synonym: aq_1358

Alternate gene names: 15606555

Gene position: 965268-966368 (Clockwise)

Preceding gene: 15606554

Following gene: 15606561

Centisome position: 62.22

GC content: 45.05

Gene sequence:

>1101_bases
ATGGAACTCCTTCCCGTGATTTGGTTCGTTTTACTTGGCTTTATAATAGCCATGTACGCCGCACTGGATGGCTTTGACCT
CGGTGTCGGGATAGTTTATCCTTTCTTGGCTAAAGATGAGGAAGAAAAGAGGATACTTCTGAACTCCATAGGACCCGTCT
GGGACGCAAACGAGGTATGGCTAATCCTGGCAGGCGGAGCTCTGTTTGCGGCTTTTCCCGTAGCTTACGCAACGCTCCAG
AGCGGTCTATACCTTCCCGTAATACTCATACTCTTTATGCTGATCCTCAGGGCGATAGGTATAGACTACAGGGGCAAGAT
GCCAACTCCAGCACTGAAGAAAACTATGGACATGGTTTTCTTTTTAGGAAGTCTCGGAGTCACGTTTTTATTCGGTCTTA
CCCTCGGAAACGTTATAAAAGGACTTCCCGTAAAACTCGTTGAAAAGGAGCTCTACGGCGAAGTGGTAAAAACGCACATG
ATATGTGCGGACCAGGACTGCAGTTACACGGGACTCCTGATAAATATACTTGATCCTTACGCCCTCCTTGTAGCACTCCT
AACAGTTAGCTTTGTTGCAATGCACGGTGCTATATATGCAGCTTACGTCACAAACGGAGACCTATCCCACAGGGCAGCCT
CTCTGGCGAAAAAACTGTGGTTCAACTCAGCACTCCTCTACTTAATCGTTCACATACTCACTATGATTTACCACCCACTC
CTCATAAAGAACTACTTCACAAGGATGTTCATATTCCCCGCACTTCCCATAGTGATAGTTGCGTTCATAACGATTATCGT
TGCTCTAAACAGGCAAAAATACTCCCTTGCATTCTGGTCCTCAACTGCCATGATATTCAGTGCTATAGGTATAGCCTTTG
CAAGTATATACCCGACGTTAGTACCTTCTATATACGACGAAAATCCTTTTGAAAACCCGGTACATTCAATAACAGTTTTT
AACAGTGCTTCCTCTGAAAAAACACTCCTCACCATGCTTATAATCGCCCTGATAGGAGTTCCCATGGTTTTAACTTACAA
GTTCTTCGTGTACAGGATCTTCTGGGGTAAGGTGAAAGTACCTAAGGAAGGAGGCTACTGA

Upstream 100 bases:

>100_bases
TTGTTCTCAAGTATTTACTTCATAGTGTTCCTTATATTCCTGGGACTTATGGTTCAAAAAGTAATCAAGGGCCCTAAGAG
ACCTGAGGAGGTGGCTTGAT

Downstream 100 bases:

>100_bases
TCTTTTCCCCTTCCTTCAATTTCTTTATATACTCTTCGGAGAGTTCAACGAGTACCGCCTCCTCATCGCAGTTTGGGAAT
TTAACGCAGTTTATACACTC

Product: cytochrome oxidase d subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVWLILAGGALFAAFPVAYATLQ
SGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVFFLGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHM
ICADQDCSYTGLLINILDPYALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPL
LIKNYFTRMFIFPALPIVIVAFITIIVALNRQKYSLAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVF
NSASSEKTLLTMLIIALIGVPMVLTYKFFVYRIFWGKVKVPKEGGY

Sequences:

>Translated_366_residues
MELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVWLILAGGALFAAFPVAYATLQ
SGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVFFLGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHM
ICADQDCSYTGLLINILDPYALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPL
LIKNYFTRMFIFPALPIVIVAFITIIVALNRQKYSLAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVF
NSASSEKTLLTMLIIALIGVPMVLTYKFFVYRIFWGKVKVPKEGGY
>Mature_366_residues
MELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVWLILAGGALFAAFPVAYATLQ
SGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVFFLGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHM
ICADQDCSYTGLLINILDPYALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPL
LIKNYFTRMFIFPALPIVIVAFITIIVALNRQKYSLAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVF
NSASSEKTLLTMLIIALIGVPMVLTYKFFVYRIFWGKVKVPKEGGY

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=388, Percent_Identity=30.9278350515464, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786954, Length=391, Percent_Identity=30.1790281329923, Blast_Score=172, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 40684; Mature: 40684

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVW
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEE
LILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVF
EEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
FLGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHMICADQDCSYTGLLINILDPY
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHH
ALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPL
HHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIKNYFTRMFIFPALPIVIVAFITIIVALNRQKYSLAFWSSTAMIFSAIGIAFASIYPTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
VPSIYDENPFENPVHSITVFNSASSEKTLLTMLIIALIGVPMVLTYKFFVYRIFWGKVKV
HHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
PKEGGY
CCCCCC
>Mature Secondary Structure
MELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVW
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEE
LILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVF
EEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
FLGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHMICADQDCSYTGLLINILDPY
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHH
ALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPL
HHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIKNYFTRMFIFPALPIVIVAFITIIVALNRQKYSLAFWSSTAMIFSAIGIAFASIYPTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
VPSIYDENPFENPVHSITVFNSASSEKTLLTMLIIALIGVPMVLTYKFFVYRIFWGKVKV
HHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
PKEGGY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]