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The map label for this gene is cydA [H]

Identifier: 15606554

GI number: 15606554

Start: 963860

End: 965266

Strand: Direct

Name: cydA [H]

Synonym: aq_1357

Alternate gene names: 15606554

Gene position: 963860-965266 (Clockwise)

Preceding gene: 15606553

Following gene: 15606555

Centisome position: 62.13

GC content: 45.84

Gene sequence:

>1407_bases
ATGGATGCAGTACTCCTTGCGAGGATTCAGTTTGCACTAACCGCCATGTACCACTTCCTGTTTGTGCCCATAACTTTAGG
ACTATCCTTACTTCTTGCCATCATATGGACAAAGTGGGCAAGGGAAGAAGACGACGAGAGGCACATCCTTTACGAGCGTA
TAGGTGAGTTTTTCACAACACTCTTTGCCATAAACTTTGCCGCTGGAGTAGTAGCCGGAATTGTTCTGGAGTTTGAGTTC
GGTACCAACTGGTCCGAGTACTCTAAAACGGTAGGTGATATATTCGGAGCACCTCTCGCGATAGAGGCTATATTCGCCTT
CTTCCTGGAATCTGTATTTCTGGGGGTCCTCCTCTTCGGAAGGGACAGAGTTTCTCCCAAGTTTTACGCTTTTTCCACAT
GGATGGTCGCAATAGGGACTAACTTATCCGCTCTATGGATACTCGTTGCAAATTCGTGGCAACAAACTCCGAAGGGCTTT
TACCTTGAAGGTGGAAAGGCTTACCTGGCCAGTTTCTTTGATGCTGTCGTAAACTACTCCACACCTTACAGGTTTGTACA
CATGTTTCTCGCGGGAGTAATAACCGGAGCCATATTTGTGGCGGGAATTAGTGCCTACTATATACTCAAGAGGAAACACC
TTGACGTGGCTAAAGAATCTTTTAGGATCGCGGTAACCATAGGAATGATTGCCTCCCTTCTGCAGATAATAGCGGGTGAC
CTACACGGGTATCAGGTTGCAAGGACACAACCTTTGAAACTTGCAATGATGGAAGACAAGTGGGAAACGGAAAGTGGTGC
CGGACTGGAAATTGTCCCGGGAATAGAGATTCCCAAACTTCTCAGTATTCTCGCCTACCACGACCCCGACGCCAAGGTTT
ACGGGATAAAGGACCTTGTTCAAACCTTCCAGAAAATAGCAAAAGGTGAAGAAGTGGGTGAAGACGAGCTTCCCGAACTC
TGGCTGGACCCCAGACAATTTGCTGGAAGACAGTCCCTTTACATAACAGAAGAGGAAATACCGCCCACCTGGATACCCTT
TTGGAGCCTAAGGGGAATGGTATTCCTTGGATTCTTTTTCGCCTTCATAACTTCCCTTGGCTTTATCTTTACAGTTCAGG
ACACAATAGAGCAAAGAAGGTGGCTTCTTAAACTATTCTTTTACTCCATTCCTCTTCCCATAGTGGCTAATATCTTAGGA
TGGATAGTGGCAGAAGTTGGAAGACAACCATGGGTTGTTTACTACATACTCAAGACAAAAGACGCAGCTTCCCCTCTTCC
TGCAGGTCAGATACTCACCTCAATAATTTTGTTCTCAAGTATTTACTTCATAGTGTTCCTTATATTCCTGGGACTTATGG
TTCAAAAAGTAATCAAGGGCCCTAAGAGACCTGAGGAGGTGGCTTGA

Upstream 100 bases:

>100_bases
AACTCTCTGATATACATCATAGAAATTAATTTACAACAAAGATCAAACTTTAAGTGTTGGGTTAATGATTATTAACTTTT
AACCTTCCGGAGGTTCGAAA

Downstream 100 bases:

>100_bases
TATGGAACTCCTTCCCGTGATTTGGTTCGTTTTACTTGGCTTTATAATAGCCATGTACGCCGCACTGGATGGCTTTGACC
TCGGTGTCGGGATAGTTTAT

Product: cytochrome oxidase d subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDAVLLARIQFALTAMYHFLFVPITLGLSLLLAIIWTKWAREEDDERHILYERIGEFFTTLFAINFAAGVVAGIVLEFEF
GTNWSEYSKTVGDIFGAPLAIEAIFAFFLESVFLGVLLFGRDRVSPKFYAFSTWMVAIGTNLSALWILVANSWQQTPKGF
YLEGGKAYLASFFDAVVNYSTPYRFVHMFLAGVITGAIFVAGISAYYILKRKHLDVAKESFRIAVTIGMIASLLQIIAGD
LHGYQVARTQPLKLAMMEDKWETESGAGLEIVPGIEIPKLLSILAYHDPDAKVYGIKDLVQTFQKIAKGEEVGEDELPEL
WLDPRQFAGRQSLYITEEEIPPTWIPFWSLRGMVFLGFFFAFITSLGFIFTVQDTIEQRRWLLKLFFYSIPLPIVANILG
WIVAEVGRQPWVVYYILKTKDAASPLPAGQILTSIILFSSIYFIVFLIFLGLMVQKVIKGPKRPEEVA

Sequences:

>Translated_468_residues
MDAVLLARIQFALTAMYHFLFVPITLGLSLLLAIIWTKWAREEDDERHILYERIGEFFTTLFAINFAAGVVAGIVLEFEF
GTNWSEYSKTVGDIFGAPLAIEAIFAFFLESVFLGVLLFGRDRVSPKFYAFSTWMVAIGTNLSALWILVANSWQQTPKGF
YLEGGKAYLASFFDAVVNYSTPYRFVHMFLAGVITGAIFVAGISAYYILKRKHLDVAKESFRIAVTIGMIASLLQIIAGD
LHGYQVARTQPLKLAMMEDKWETESGAGLEIVPGIEIPKLLSILAYHDPDAKVYGIKDLVQTFQKIAKGEEVGEDELPEL
WLDPRQFAGRQSLYITEEEIPPTWIPFWSLRGMVFLGFFFAFITSLGFIFTVQDTIEQRRWLLKLFFYSIPLPIVANILG
WIVAEVGRQPWVVYYILKTKDAASPLPAGQILTSIILFSSIYFIVFLIFLGLMVQKVIKGPKRPEEVA
>Mature_468_residues
MDAVLLARIQFALTAMYHFLFVPITLGLSLLLAIIWTKWAREEDDERHILYERIGEFFTTLFAINFAAGVVAGIVLEFEF
GTNWSEYSKTVGDIFGAPLAIEAIFAFFLESVFLGVLLFGRDRVSPKFYAFSTWMVAIGTNLSALWILVANSWQQTPKGF
YLEGGKAYLASFFDAVVNYSTPYRFVHMFLAGVITGAIFVAGISAYYILKRKHLDVAKESFRIAVTIGMIASLLQIIAGD
LHGYQVARTQPLKLAMMEDKWETESGAGLEIVPGIEIPKLLSILAYHDPDAKVYGIKDLVQTFQKIAKGEEVGEDELPEL
WLDPRQFAGRQSLYITEEEIPPTWIPFWSLRGMVFLGFFFAFITSLGFIFTVQDTIEQRRWLLKLFFYSIPLPIVANILG
WIVAEVGRQPWVVYYILKTKDAASPLPAGQILTSIILFSSIYFIVFLIFLGLMVQKVIKGPKRPEEVA

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=505, Percent_Identity=39.6039603960396, Blast_Score=325, Evalue=5e-90,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=38.4920634920635, Blast_Score=314, Evalue=1e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52857; Mature: 52857

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVLLARIQFALTAMYHFLFVPITLGLSLLLAIIWTKWAREEDDERHILYERIGEFFTT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LFAINFAAGVVAGIVLEFEFGTNWSEYSKTVGDIFGAPLAIEAIFAFFLESVFLGVLLFG
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
RDRVSPKFYAFSTWMVAIGTNLSALWILVANSWQQTPKGFYLEGGKAYLASFFDAVVNYS
CCCCCCCHHHHHHHHHHHCCCHHEEHEEEECCCCCCCCCEEEECHHHHHHHHHHHHHCCC
TPYRFVHMFLAGVITGAIFVAGISAYYILKRKHLDVAKESFRIAVTIGMIASLLQIIAGD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCC
LHGYQVARTQPLKLAMMEDKWETESGAGLEIVPGIEIPKLLSILAYHDPDAKVYGIKDLV
CCCCEECCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEECHHHHH
QTFQKIAKGEEVGEDELPELWLDPRQFAGRQSLYITEEEIPPTWIPFWSLRGMVFLGFFF
HHHHHHHCCCCCCCCCCHHHCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
AFITSLGFIFTVQDTIEQRRWLLKLFFYSIPLPIVANILGWIVAEVGRQPWVVYYILKTK
HHHHHHHHEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEECC
DAASPLPAGQILTSIILFSSIYFIVFLIFLGLMVQKVIKGPKRPEEVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDAVLLARIQFALTAMYHFLFVPITLGLSLLLAIIWTKWAREEDDERHILYERIGEFFTT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LFAINFAAGVVAGIVLEFEFGTNWSEYSKTVGDIFGAPLAIEAIFAFFLESVFLGVLLFG
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
RDRVSPKFYAFSTWMVAIGTNLSALWILVANSWQQTPKGFYLEGGKAYLASFFDAVVNYS
CCCCCCCHHHHHHHHHHHCCCHHEEHEEEECCCCCCCCCEEEECHHHHHHHHHHHHHCCC
TPYRFVHMFLAGVITGAIFVAGISAYYILKRKHLDVAKESFRIAVTIGMIASLLQIIAGD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCC
LHGYQVARTQPLKLAMMEDKWETESGAGLEIVPGIEIPKLLSILAYHDPDAKVYGIKDLV
CCCCEECCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEECHHHHH
QTFQKIAKGEEVGEDELPELWLDPRQFAGRQSLYITEEEIPPTWIPFWSLRGMVFLGFFF
HHHHHHHCCCCCCCCCCHHHCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
AFITSLGFIFTVQDTIEQRRWLLKLFFYSIPLPIVANILGWIVAEVGRQPWVVYYILKTK
HHHHHHHHEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEECC
DAASPLPAGQILTSIILFSSIYFIVFLIFLGLMVQKVIKGPKRPEEVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]