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The map label for this gene is omp [H]

Identifier: 15606510

GI number: 15606510

Start: 920473

End: 922809

Strand: Direct

Name: omp [H]

Synonym: aq_1300

Alternate gene names: 15606510

Gene position: 920473-922809 (Clockwise)

Preceding gene: 15606509

Following gene: 15606514

Centisome position: 59.33

GC content: 41.93

Gene sequence:

>2337_bases
GTGAAAAAGGAATTTTTAACCCTAGCCCTTTTTTTAGGTGTAGCTAACGCCGCAGAAATAGAAAAGATAATAATTAAAGG
GAATAAGTACATTCCCGATGAATTAATAAGGGGACTTTTAAGCGTAAGAAAGGGTTCAGAGTTTTCCCTTGAAAGGATAA
GAAAAGACATAAGGAAACTTTACAGAACTGGACTCTTTACAAAGGTAGAAGCTTACGAAGAAGATCAAAATAAAAACGGA
AAACCTGAAGTAATACTGGTGGTTGAAGACCTTCCCGTAATTTACAAAATAGAGTTTGAGGGGAATGAGGAGTTCTCTGA
CGACGACCTGAAGGAGTACCTCGGTATAGAGACGGAGCTCGGGGAAGTAGAAGTGGAAGAAACCATAGAAGGATACACTT
CCAGCCCTGCAATAGAAGAAAGACTTGCCGTAATGAAACAATTAAAACTCGGTCGTATACTTACCTTTCAGGAAATAGAG
AGTTTAAGAAGGAGAATTGAAGAGGTATACAAGAGGCACGGCTTTGTAGGGACGAAAGTTGAGTACAAGCTCATCCCGAA
AAAAGGAGCTTCAAAACTCGTTTTTGTCATACATGAAGGTAAAAAGATTTACACCTCCGATATAGAGATAGAAGGAAATA
AACACTTCAGCGACCGGAAGTTAAAAGGTCTAATGGAATTAAAAGAGCCAAACATTTTCCTCTTTAGACTGCACCCGGCT
TTTAGTGAAGAAACGCTAAAAGAAGATGTAAAAAAGATAGAGGAGTTTTATAAAAATGAGGGTTTTTTAGAAGTTGAAGT
ATCTTACGAAGTTAAAGAAGAAGGACCAGCACGTAAGGTAATCGTAAAAGTAAAGGAAGGTCCGAGGTACAAACTGAAAG
AGATAAAGATAGAGGGAAACACTCTCTTCGCTTACAGCGAACTAGTTGATAACATCCTGAAAAAGAACGAGAGAAAAGGC
AGGTATTTCAGAAGGGAGGTTATTGAGAAGATTAAAAACAGGATAAGGGAGAAGTATGCGGAAATAGGATTTTTAAACAC
AAGCGTGGAAGAAAGGGTAAATGTAAATCCTGAAAAGAAAGAAGTTTCAGTTCTACTAAAGATAATAGAAGGAAAACCAG
TGTACGTAAAGAAGATAAAGATTAAGGGGAATTACGAGACGAGAGATTACGTGATAAGGAGGGAAATGAGAGTTCAGGAA
AACGAACTTGCCCTTAAAAAGGGTATAGAGCGTTCGAAAACACGGATAATGAACTTAGGTTACTACGAAGATGTACAGAT
AGAGCCCGTTCCGAGAAGGGACGCATGGTGGGATCTTCTCGTTAAGATAAGGGAGAGGTTCACAGGTCAGTTCTCTGTGG
GACTTTCTTACAACGAAGTTACGGGACTCGCAGGGTTTATTGAACTCAGGAAGGGTAATTTCAGGGGTACGGGGGACATA
GCCGGGATAAGCGTAAGCTACGGTTCCCTGTACAGGAACAACGCTATCTCCTACACGAGAAAGTGGTTCCTTAAAAAACC
TGTGGATTTAGACCTTTCGGCTTTCGACAGGAGGATAGAGTACGACACTTACACTGTTGAGAGAACTGGTTTTTCAGTAG
CGCTTTCCAAAGAGCTGAGTGAGTACTGGAGGGCGTCTATAGGAACTTCGATCCAAAGGGTAAAGTACAGCGATATAGAC
CCTGAGGCGAGCACTTATGTTAAAGAGCAGGCAGGAAGAAGGGACTCGAGAAAGATATTCTTTACCCTCACAAGGGATAC
CAGAGATTACTACCTCCTGCCCACAAAAGGTTCACTTTTTGTGTTTAGAAATAGCGTTGGGGTAGGACTCCTCGGCGGTG
ATGAGAAGTTTTACAAGTTCGAAGTTGAGGGAGCAAAGTACTTCAGTGATACTTACTTTGACACGGGAATTATACTCAGT
CTGAAGGGTGAAGTTGGATTTGTAGAAGGATACGGCGGTAAAAAGGTTCCCATAGACGAGCGCTTCTTCGTAGGGGGAGA
CTTTTCCATCAGGGGTTACGAATACGGATACGCGGGACCGGTGGATCCAAACACTTTAGATCCCATAGGTGCTAAAAAGA
AGGTGATTACGAGTTTAGAACTCATGTACCCGGTCTTTAAGAAAATGCTTTACTTCGCGGGATTTTTCGATTACGGACTG
GGTGCGGATAAGTGGAGTGACTTTAAGCTTTCAAACTTCAGGGGTGGCTACGGTATAGGCGTGAGGATAATAACTCCCTT
TGCTCCTATAAGGATAGACTGGGCATTCAAGACAAAAACCGTACCGGGTGATACGAACCGCTCAAGGATACACTTCGTTC
TCGGAACCTTCTTCTGA

Upstream 100 bases:

>100_bases
GACAAGCCCTACCTCAAACCCGTAAAGAAGAAGGAAAAAGTAGAAGCCCTTCTCGAAAAGTAAGCCCCTTTTTCCTTCTT
TCCTTTATAATACTTTCCTT

Downstream 100 bases:

>100_bases
TAAAAGTAAAAAAGAGAAGGGCGAATTACTCGCCCAAAACTCTTACGTTTTTAGCCCTTGGACCTTTTGTGTCTTCAACT
ACGTCAAACTCTACTTTTTG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 778

Protein sequence:

>778_residues
MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKLYRTGLFTKVEAYEEDQNKNG
KPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETELGEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIE
SLRRRIEEVYKRHGFVGTKVEYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA
FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGNTLFAYSELVDNILKKNERKG
RYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKKEVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQE
NELALKKGIERSKTRIMNLGYYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI
AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELSEYWRASIGTSIQRVKYSDID
PEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLFVFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILS
LKGEVGFVEGYGGKKVPIDERFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL
GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF

Sequences:

>Translated_778_residues
MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKLYRTGLFTKVEAYEEDQNKNG
KPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETELGEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIE
SLRRRIEEVYKRHGFVGTKVEYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA
FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGNTLFAYSELVDNILKKNERKG
RYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKKEVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQE
NELALKKGIERSKTRIMNLGYYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI
AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELSEYWRASIGTSIQRVKYSDID
PEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLFVFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILS
LKGEVGFVEGYGGKKVPIDERFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL
GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF
>Mature_778_residues
MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKLYRTGLFTKVEAYEEDQNKNG
KPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETELGEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIE
SLRRRIEEVYKRHGFVGTKVEYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA
FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGNTLFAYSELVDNILKKNERKG
RYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKKEVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQE
NELALKKGIERSKTRIMNLGYYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI
AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELSEYWRASIGTSIQRVKYSDID
PEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLFVFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILS
LKGEVGFVEGYGGKKVPIDERFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL
GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=796, Percent_Identity=23.2412060301508, Blast_Score=177, Evalue=3e-45,
Organism=Escherichia coli, GI1790666, Length=185, Percent_Identity=34.5945945945946, Blast_Score=77, Evalue=6e-15,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 90000; Mature: 90000

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKL
CCCHHHHHHHHHHCCCHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRTGLFTKVEAYEEDQNKNGKPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETEL
HHCCCCEEEEHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCC
GEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIESLRRRIEEVYKRHGFVGTKV
CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCCCCEE
EYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA
EEEEECCCCCCEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCC
FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGN
CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEECC
TLFAYSELVDNILKKNERKGRYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKK
EEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHCCCCCCHH
EVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQENELALKKGIERSKTRIMNLG
HHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHEEECC
YYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI
CCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHCCEEEEEEECCCCCCCCCE
AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELS
EEEEEECCHHHCCCCHHHHHHHHHCCCCCCCHHHHCCEEECCEEEEEECCCEEEHHHHHH
EYWRASIGTSIQRVKYSDIDPEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLF
HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCEE
VFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILSLKGEVGFVEGYGGKKVPIDE
EEECCCCEEEECCCCEEEEEEECCCEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCC
RFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL
EEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF
CCCCCCCCEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKEFLTLALFLGVANAAEIEKIIIKGNKYIPDELIRGLLSVRKGSEFSLERIRKDIRKL
CCCHHHHHHHHHHCCCHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRTGLFTKVEAYEEDQNKNGKPEVILVVEDLPVIYKIEFEGNEEFSDDDLKEYLGIETEL
HHCCCCEEEEHHHCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCC
GEVEVEETIEGYTSSPAIEERLAVMKQLKLGRILTFQEIESLRRRIEEVYKRHGFVGTKV
CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCCCCEE
EYKLIPKKGASKLVFVIHEGKKIYTSDIEIEGNKHFSDRKLKGLMELKEPNIFLFRLHPA
EEEEECCCCCCEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCC
FSEETLKEDVKKIEEFYKNEGFLEVEVSYEVKEEGPARKVIVKVKEGPRYKLKEIKIEGN
CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEECC
TLFAYSELVDNILKKNERKGRYFRREVIEKIKNRIREKYAEIGFLNTSVEERVNVNPEKK
EEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHCCCCCCHH
EVSVLLKIIEGKPVYVKKIKIKGNYETRDYVIRREMRVQENELALKKGIERSKTRIMNLG
HHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHEEECC
YYEDVQIEPVPRRDAWWDLLVKIRERFTGQFSVGLSYNEVTGLAGFIELRKGNFRGTGDI
CCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHCCEEEEEEECCCCCCCCCE
AGISVSYGSLYRNNAISYTRKWFLKKPVDLDLSAFDRRIEYDTYTVERTGFSVALSKELS
EEEEEECCHHHCCCCHHHHHHHHHCCCCCCCHHHHCCEEECCEEEEEECCCEEEHHHHHH
EYWRASIGTSIQRVKYSDIDPEASTYVKEQAGRRDSRKIFFTLTRDTRDYYLLPTKGSLF
HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCEE
VFRNSVGVGLLGGDEKFYKFEVEGAKYFSDTYFDTGIILSLKGEVGFVEGYGGKKVPIDE
EEECCCCEEEECCCCEEEEEEECCCEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCC
RFFVGGDFSIRGYEYGYAGPVDPNTLDPIGAKKKVITSLELMYPVFKKMLYFAGFFDYGL
EEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GADKWSDFKLSNFRGGYGIGVRIITPFAPIRIDWAFKTKTVPGDTNRSRIHFVLGTFF
CCCCCCCCEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]