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The map label for this gene is xerD [H]

Identifier: 15606394

GI number: 15606394

Start: 794867

End: 795739

Strand: Direct

Name: xerD [H]

Synonym: aq_1137

Alternate gene names: 15606394

Gene position: 794867-795739 (Clockwise)

Preceding gene: 15606385

Following gene: 15606395

Centisome position: 51.24

GC content: 44.9

Gene sequence:

>873_bases
ATGGGAGTTCTCGAGGCGTGGGAGAGGCATCTGGAAAAGACAAAGAGCCAGAAAACAAAAGAAACGTACCTTATGCTAGT
CAAGGAATTTTTCAAGTTCCACAAAGTTGACGAAAAGGAAATAATTGAAAATCTGAAACCTTCCATGGTTTACAGATTCG
TAGACGAGAGCGATCTAAACCCGAGTTCTCTTCTCACGACCCTTTCCGCCCTCAGGTACTTCTTAAAGTTCTTAACGAGG
AGGGAGTACATAGAAAAGAGTATGTACGAAAGCCTTAAGGCCGCTATAGAGGAGGCGAGGGAAGAACTCAACGCAAAGAA
AACACCACGCTATCCGAGGGCTCTTACCAGAGAAGAAATAGAGGCGATATTTGAAAAGGTAAAAGGTAAGAAGTACGAAA
AGATTTACACGCTCTTTCTCTACAGCGGTATAAGACTCGGGGAGTACGAGAAACTCTCCGAAGAAAACTTCTTCATGGAC
AAGAGTGGTATACTCTGGATCAAGTTAACACCTGAAATGACCAAGAGAAACAAAGGGAGGCTCGTTCCTATACTCTCTCC
CGACAAGGACGAAACACTCAAGGTTACTGAGAAACTTAGCAGGTGGATAGAAGACTTTGAAGGGAACTTCCGCGTAAAGA
GGGGGGTGCTTCAGGTTTACACGGACAGGCTCTCCAAGAGGTTAAACATAGACTTCAGTATCCACAGCTTCAGGCACACC
TATATCACGAACCTCATAAATTCCGGCTTCCCCATTGAGGTGGTAAAGGAGTTTGCGGGGCACTCGAGCATAAAGACTAC
CGTGGAGACTTATTACAAGTTCAGTCAAAAGAGGGCACAGGAACTCGTAAGGAACTTCCTCTTTTCGCAGTAA

Upstream 100 bases:

>100_bases
AAAAAGCTGAGGTCTATATCTCCCTCGTCGGTCTCAAGGAGGTTAGAACCTATCTTGAAAACTATTCTCATGTGAGTTTT
ATATATTAAATCATTAATTT

Downstream 100 bases:

>100_bases
AATCGTATTTATGAAGATAGCTATCGGTTCGGATCACGCGGGATTTCCTCTAAAGGAAAAGATAAAGGAATTTTTAAAGG
GAGAAGGGCACAAGGTTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MGVLEAWERHLEKTKSQKTKETYLMLVKEFFKFHKVDEKEIIENLKPSMVYRFVDESDLNPSSLLTTLSALRYFLKFLTR
REYIEKSMYESLKAAIEEAREELNAKKTPRYPRALTREEIEAIFEKVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMD
KSGILWIKLTPEMTKRNKGRLVPILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQVYTDRLSKRLNIDFSIHSFRHT
YITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQELVRNFLFSQ

Sequences:

>Translated_290_residues
MGVLEAWERHLEKTKSQKTKETYLMLVKEFFKFHKVDEKEIIENLKPSMVYRFVDESDLNPSSLLTTLSALRYFLKFLTR
REYIEKSMYESLKAAIEEAREELNAKKTPRYPRALTREEIEAIFEKVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMD
KSGILWIKLTPEMTKRNKGRLVPILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQVYTDRLSKRLNIDFSIHSFRHT
YITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQELVRNFLFSQ
>Mature_289_residues
GVLEAWERHLEKTKSQKTKETYLMLVKEFFKFHKVDEKEIIENLKPSMVYRFVDESDLNPSSLLTTLSALRYFLKFLTRR
EYIEKSMYESLKAAIEEAREELNAKKTPRYPRALTREEIEAIFEKVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDK
SGILWIKLTPEMTKRNKGRLVPILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQVYTDRLSKRLNIDFSIHSFRHTY
ITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQELVRNFLFSQ

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34531; Mature: 34400

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVLEAWERHLEKTKSQKTKETYLMLVKEFFKFHKVDEKEIIENLKPSMVYRFVDESDLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCC
PSSLLTTLSALRYFLKFLTRREYIEKSMYESLKAAIEEAREELNAKKTPRYPRALTREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
EAIFEKVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDKSGILWIKLTPEMTKRNKGR
HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCEEEEEECHHHHCCCCCC
LVPILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQVYTDRLSKRLNIDFSIHSFRHT
EEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHH
YITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQELVRNFLFSQ
HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVLEAWERHLEKTKSQKTKETYLMLVKEFFKFHKVDEKEIIENLKPSMVYRFVDESDLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCC
PSSLLTTLSALRYFLKFLTRREYIEKSMYESLKAAIEEAREELNAKKTPRYPRALTREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
EAIFEKVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDKSGILWIKLTPEMTKRNKGR
HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCEEEEEECHHHHCCCCCC
LVPILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQVYTDRLSKRLNIDFSIHSFRHT
EEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHH
YITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQELVRNFLFSQ
HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]