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The map label for this gene is yabB [H]

Identifier: 15606087

GI number: 15606087

Start: 459716

End: 460435

Strand: Direct

Name: yabB [H]

Synonym: aq_674

Alternate gene names: 15606087

Gene position: 459716-460435 (Clockwise)

Preceding gene: 15606086

Following gene: 15606090

Centisome position: 29.63

GC content: 40.0

Gene sequence:

>720_bases
TTGAAAAGTACAGATAACTCAAAACCCGTCCCCTTCTTTCGGGGAAAATTAAAATTTTTTCAACCGAAAGAGCACAAAAT
CTCCGTTGACCTCGTACTTTTCCTCTCAAAAATCAAACCTCCTAAGAGGAATTACAGAATAATAGACCTCGGCGCTGGTT
TTGGCTTCCTTTCTATAACCCTTGCAAAAAAGTACGGAGTTAAAGTAGTAGCCTTTGAATACGACGAAAGAATGGTAAAA
CTATTGAGGAAAAACGTAAAGTTAAACGGCGTTGAACACCTTGTTGAAGTGGTGGAGGGGGACATAAAAGAGATAGAAAA
GCATCTCTCTAGAGGTTCTTTTAACTTGGTAGTTTCAAACCCTCCTTTTTACCCGATAAATTATTCACCAAATCCAGAAC
CCTACCACTTTGAGGTTTACGCAACCCTGAAAGATTTTGTAAGGGCTTCCTCTTACCTTTTGAAGGACGGCGGAGAGCTT
TACCTTCTCTCTCCTTGCTTTCGCCTCTACGAGCTCACAGAATACCTTTCAAACTTCAATTTACCTTTAAGGAAACTCTC
TTTAATTTACCCTACTCCCCTAAAGAGGGCGAGACTTGCGATTACCGTATCCGTTAAAAACGTAAAAGGACAGCTCGAGT
GCGATAAACCCCTGATAATAAATAAAGAAAACGGAGAGTATACAGAAGAGGTAAAACAGCTCCTTGAAAACTTCCTTTAA

Upstream 100 bases:

>100_bases
TTTGAAGAAGCCGTGAAGAAAATGGCAACCGCCCAAACTATGGAAGAGTTAAAAGAGTGGGAGAAGGAAGCAGAAAAGGC
AAGAACTCTCTTAGAACTCG

Downstream 100 bases:

>100_bases
AACCTGTGCTCTCTTCCCGTAAGGAGTCTGTTTATGTTTTCCCTGTGCCTGTAAATTATCAACGCACCTATAACGATAGC
CATAAAAAGAACGTTGACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKSTDNSKPVPFFRGKLKFFQPKEHKISVDLVLFLSKIKPPKRNYRIIDLGAGFGFLSITLAKKYGVKVVAFEYDERMVK
LLRKNVKLNGVEHLVEVVEGDIKEIEKHLSRGSFNLVVSNPPFYPINYSPNPEPYHFEVYATLKDFVRASSYLLKDGGEL
YLLSPCFRLYELTEYLSNFNLPLRKLSLIYPTPLKRARLAITVSVKNVKGQLECDKPLIINKENGEYTEEVKQLLENFL

Sequences:

>Translated_239_residues
MKSTDNSKPVPFFRGKLKFFQPKEHKISVDLVLFLSKIKPPKRNYRIIDLGAGFGFLSITLAKKYGVKVVAFEYDERMVK
LLRKNVKLNGVEHLVEVVEGDIKEIEKHLSRGSFNLVVSNPPFYPINYSPNPEPYHFEVYATLKDFVRASSYLLKDGGEL
YLLSPCFRLYELTEYLSNFNLPLRKLSLIYPTPLKRARLAITVSVKNVKGQLECDKPLIINKENGEYTEEVKQLLENFL
>Mature_239_residues
MKSTDNSKPVPFFRGKLKFFQPKEHKISVDLVLFLSKIKPPKRNYRIIDLGAGFGFLSITLAKKYGVKVVAFEYDERMVK
LLRKNVKLNGVEHLVEVVEGDIKEIEKHLSRGSFNLVVSNPPFYPINYSPNPEPYHFEVYATLKDFVRASSYLLKDGGEL
YLLSPCFRLYELTEYLSNFNLPLRKLSLIYPTPLKRARLAITVSVKNVKGQLECDKPLIINKENGEYTEEVKQLLENFL

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 27596; Mature: 27596

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS01131 RRNA_A_DIMETH ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTDNSKPVPFFRGKLKFFQPKEHKISVDLVLFLSKIKPPKRNYRIIDLGAGFGFLSIT
CCCCCCCCCCCCEECCEEEECCCCCEEEHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE
LAKKYGVKVVAFEYDERMVKLLRKNVKLNGVEHLVEVVEGDIKEIEKHLSRGSFNLVVSN
EEHHCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEECC
PPFYPINYSPNPEPYHFEVYATLKDFVRASSYLLKDGGELYLLSPCFRLYELTEYLSNFN
CCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCC
LPLRKLSLIYPTPLKRARLAITVSVKNVKGQLECDKPLIINKENGEYTEEVKQLLENFL
CCHHHEEEECCCCCCCEEEEEEEEEECCCCEEECCCCEEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKSTDNSKPVPFFRGKLKFFQPKEHKISVDLVLFLSKIKPPKRNYRIIDLGAGFGFLSIT
CCCCCCCCCCCCEECCEEEECCCCCEEEHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE
LAKKYGVKVVAFEYDERMVKLLRKNVKLNGVEHLVEVVEGDIKEIEKHLSRGSFNLVVSN
EEHHCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEECC
PPFYPINYSPNPEPYHFEVYATLKDFVRASSYLLKDGGELYLLSPCFRLYELTEYLSNFN
CCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCC
LPLRKLSLIYPTPLKRARLAITVSVKNVKGQLECDKPLIINKENGEYTEEVKQLLENFL
CCHHHEEEECCCCCCCEEEEEEEEEECCCCEEECCCCEEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]