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The map label for this gene is dmsB [H]

Identifier: 15603620

GI number: 15603620

Start: 1979499

End: 1980119

Strand: Direct

Name: dmsB [H]

Synonym: PM1755

Alternate gene names: 15603620

Gene position: 1979499-1980119 (Clockwise)

Preceding gene: 15603619

Following gene: 15603621

Centisome position: 87.69

GC content: 42.83

Gene sequence:

>621_bases
ATGAGTGTTCAGTATGGCTTTTATTTTGACTCAGATCGTTGCACCGGCTGTAAGACTTGTGAATTAGCCTGCAAAGACTA
TAAAGACCTCGATACCAACGTGAATTTTCGTCGCATTTATGAATATGCAGGTGGTGACTGGCAACAGCAGGCAAATGGAT
GTTGGCAACATAATGTTTTTGCTTATTATTTATCGATTTCCTGTAATCACTGCGACAATCCTGCTTGTGTGTCAGTTTGT
CCAACGGGTGCAATGCATAAAACAGAAGATGGCTTTGTCATCGTGAATGAAGCAATCTGTATTGGTTGTCGTTATTGTCA
TATGGCTTGTCCTTATGATGCACCACAATATGATGCAATGAAAGGGCATATGACTAAATGCGATGGCTGCCATTCACGTA
TATTGGAAGGGAAAAAACCGATTTGTGTTGATGCGTGTCCATTACGGGCTCTAGATTTTGCGCCCATTGATGAACTACGC
AAAACCTATGGTGATTTAGCGGCGATTGCGCCATTACCCTCGCCAGAACATACTGCGCCAAATTTGGTGATTAAGACCAA
TAAAAATGCGCGTCCAACGGGGGATACAACCGGTTTTTTAGCGAATCCAAGGGAGGTGTAA

Upstream 100 bases:

>100_bases
TGTGTGAACGTATTGACAACACAACGTCCATCGCCTCTCGCGAAGGGTAATCCACAGCATTCTAACTTAGTTCAAGTTGC
GAAAGTGTAAGGAGTAAATG

Downstream 100 bases:

>100_bases
GATGAACGGATTACACGAATTACCTTTAGTGATTTTCACCGTATTAGCACAGTCAGTTGTGGGGGCTTTTTTACTCTTTG
CTATTGTTCTATTTACGACA

Product: DmsB

Products: Reduced form of N-Oxide compounds [C]

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSVQYGFYFDSDRCTGCKTCELACKDYKDLDTNVNFRRIYEYAGGDWQQQANGCWQHNVFAYYLSISCNHCDNPACVSVC
PTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYDAMKGHMTKCDGCHSRILEGKKPICVDACPLRALDFAPIDELR
KTYGDLAAIAPLPSPEHTAPNLVIKTNKNARPTGDTTGFLANPREV

Sequences:

>Translated_206_residues
MSVQYGFYFDSDRCTGCKTCELACKDYKDLDTNVNFRRIYEYAGGDWQQQANGCWQHNVFAYYLSISCNHCDNPACVSVC
PTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYDAMKGHMTKCDGCHSRILEGKKPICVDACPLRALDFAPIDELR
KTYGDLAAIAPLPSPEHTAPNLVIKTNKNARPTGDTTGFLANPREV
>Mature_205_residues
SVQYGFYFDSDRCTGCKTCELACKDYKDLDTNVNFRRIYEYAGGDWQQQANGCWQHNVFAYYLSISCNHCDNPACVSVCP
TGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYDAMKGHMTKCDGCHSRILEGKKPICVDACPLRALDFAPIDELRK
TYGDLAAIAPLPSPEHTAPNLVIKTNKNARPTGDTTGFLANPREV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=206, Percent_Identity=75.7281553398058, Blast_Score=342, Evalue=1e-95,
Organism=Escherichia coli, GI1787872, Length=206, Percent_Identity=74.2718446601942, Blast_Score=337, Evalue=4e-94,
Organism=Escherichia coli, GI226510944, Length=156, Percent_Identity=35.2564102564103, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI2367345, Length=171, Percent_Identity=33.9181286549708, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1789370, Length=200, Percent_Identity=32, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790326, Length=168, Percent_Identity=29.7619047619048, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787749, Length=159, Percent_Identity=28.9308176100629, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787478, Length=117, Percent_Identity=35.8974358974359, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787740, Length=91, Percent_Identity=39.5604395604396, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI87082179, Length=157, Percent_Identity=30.5732484076433, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI2367245, Length=161, Percent_Identity=29.8136645962733, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789067, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082180, Length=194, Percent_Identity=28.8659793814433, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1788811, Length=156, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787963, Length=147, Percent_Identity=29.2517006802721, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22901; Mature: 22770

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQYGFYFDSDRCTGCKTCELACKDYKDLDTNVNFRRIYEYAGGDWQQQANGCWQHNVF
CCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCEE
AYYLSISCNHCDNPACVSVCPTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYDAM
EEEEEEECCCCCCCCEEEECCCCCCEECCCCEEEEECCEEEHHHHHEEECCCCCCCCCCC
KGHMTKCDGCHSRILEGKKPICVDACPLRALDFAPIDELRKTYGDLAAIAPLPSPEHTAP
CCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCEEEECCCCCCCCCCC
NLVIKTNKNARPTGDTTGFLANPREV
EEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVQYGFYFDSDRCTGCKTCELACKDYKDLDTNVNFRRIYEYAGGDWQQQANGCWQHNVF
CEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCEE
AYYLSISCNHCDNPACVSVCPTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYDAM
EEEEEEECCCCCCCCEEEECCCCCCEECCCCEEEEECCEEEHHHHHEEECCCCCCCCCCC
KGHMTKCDGCHSRILEGKKPICVDACPLRALDFAPIDELRKTYGDLAAIAPLPSPEHTAP
CCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCEEEECCCCCCCCCCC
NLVIKTNKNARPTGDTTGFLANPREV
EEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Iron-Sulfur Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 8635740 [H]