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The map label for this gene is rbn [C]

Identifier: 15603481

GI number: 15603481

Start: 1825458

End: 1826408

Strand: Reverse

Name: rbn [C]

Synonym: PM1616

Alternate gene names: 15603481

Gene position: 1826408-1825458 (Counterclockwise)

Preceding gene: 15603482

Following gene: 15603480

Centisome position: 80.9

GC content: 39.54

Gene sequence:

>951_bases
GTGAACAACGTTTTAAAAAATGCTGGACTTTTTTTAAGATTATTTTGGCTTCGTTTTCAACAAAACAAATTAAGCCAAGC
AGCTGGCTACTTAACTTACAGCACTATGCTCGCCTTGGTTCCGTTAGTCATGGTCGTCTTTTCAGTCTTCTCCGCCTTTC
CGGTTTTTAATGAAGTTACTGATGAATTAAAAGGTTTTATTTTCAATAACTTTGCACCACAAGCCAGTGATATGGTCGGA
CAATATATTGATGAGTTCGTGAGTAACTCTAAACAAATGAGCGCAGTTGGTGTGATCAGTTTGGTCGTGGTGGCATTAAT
GCTGATTAACTCCATTGATCGTACGCTCAATTCGATTTGGCATGATACGACTATTCGCCCCCTCGTTTTTTCATTTGCTA
TTTATTGGCTCATTTTGACTTTAGGTCCATTATTAATTGGGGCAAGTATCGGTGTAAGTTCTTACATTGCTGCCATGTTG
AATGAAAATATTTCCTTGCCATTCGGTTTGAAAATATTGAGTTTTGTGCCGTTCTTTTTAACTTGGTTAATTTTCACCTT
GATTTACACGGTCGTCCCGAATAAAAAAGTCAAAATTATGCACTCTGCCATCGGCGCACTCGTCGCAGCCGTATTCTTCA
CATTAGGGAAACAAGCTTTCCTTTGGTATGTCACTACCTTCCCGTCCTATCAACTGATTTATGGTGCAATGGCAACCTTA
CCCATCATGCTATTGTGGATTCAATTAAGCTGGGTCGTCATTCTAATTGGTGCACAATTAGCATCTGTGCTTGCCGATTA
CACGTTATGTACGCAAGGTAAAATCCGTGTTGAAGAGCTTGTCGCAGCAGATACACACGAACCCGCGTTACAACAAAAAA
TGGAAAAAACAGAACAAACACTCAAAACAGAAATAACTCAGCAAAAACAACGATTGGAGAAACAAGGATGA

Upstream 100 bases:

>100_bases
GTTGGTATTTTGTCGATCCCACGGTGACATTACCGAATATGAAACAACCTTGCCTGTGTGGCTCAAATAAAAAATTTAAA
CATTGTTGTGGAGGTTTACT

Downstream 100 bases:

>100_bases
TTGCATTAATTCAACGTGTCAGCCAAGCGAAAGTGGACGTGGATAAGCAAACAGTAGGCGAAATTGGGCATGGCTTATTG
GTGCTACTGGGTGTGCAAAA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNNVLKNAGLFLRLFWLRFQQNKLSQAAGYLTYSTMLALVPLVMVVFSVFSAFPVFNEVTDELKGFIFNNFAPQASDMVG
QYIDEFVSNSKQMSAVGVISLVVVALMLINSIDRTLNSIWHDTTIRPLVFSFAIYWLILTLGPLLIGASIGVSSYIAAML
NENISLPFGLKILSFVPFFLTWLIFTLIYTVVPNKKVKIMHSAIGALVAAVFFTLGKQAFLWYVTTFPSYQLIYGAMATL
PIMLLWIQLSWVVILIGAQLASVLADYTLCTQGKIRVEELVAADTHEPALQQKMEKTEQTLKTEITQQKQRLEKQG

Sequences:

>Translated_316_residues
MNNVLKNAGLFLRLFWLRFQQNKLSQAAGYLTYSTMLALVPLVMVVFSVFSAFPVFNEVTDELKGFIFNNFAPQASDMVG
QYIDEFVSNSKQMSAVGVISLVVVALMLINSIDRTLNSIWHDTTIRPLVFSFAIYWLILTLGPLLIGASIGVSSYIAAML
NENISLPFGLKILSFVPFFLTWLIFTLIYTVVPNKKVKIMHSAIGALVAAVFFTLGKQAFLWYVTTFPSYQLIYGAMATL
PIMLLWIQLSWVVILIGAQLASVLADYTLCTQGKIRVEELVAADTHEPALQQKMEKTEQTLKTEITQQKQRLEKQG
>Mature_316_residues
MNNVLKNAGLFLRLFWLRFQQNKLSQAAGYLTYSTMLALVPLVMVVFSVFSAFPVFNEVTDELKGFIFNNFAPQASDMVG
QYIDEFVSNSKQMSAVGVISLVVVALMLINSIDRTLNSIWHDTTIRPLVFSFAIYWLILTLGPLLIGASIGVSSYIAAML
NENISLPFGLKILSFVPFFLTWLIFTLIYTVVPNKKVKIMHSAIGALVAAVFFTLGKQAFLWYVTTFPSYQLIYGAMATL
PIMLLWIQLSWVVILIGAQLASVLADYTLCTQGKIRVEELVAADTHEPALQQKMEKTEQTLKTEITQQKQRLEKQG

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=274, Percent_Identity=43.7956204379562, Blast_Score=250, Evalue=9e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1616_PASMU (Q9CKJ9)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246555.1
- GeneID:   1244963
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1616
- NMPDR:   fig|272843.1.peg.1617
- HOGENOM:   HBG451793
- OMA:   FDPKEVF
- ProtClustDB:   PRK01637
- BioCyc:   PMUL272843:PM1616-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 35431; Mature: 35431

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdad6aac)-; HASH(0xf1419c0)-; HASH(0xd59613c)-; HASH(0xeedc22c)-; HASH(0xf15dc60)-; HASH(0xf123ae4)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNVLKNAGLFLRLFWLRFQQNKLSQAAGYLTYSTMLALVPLVMVVFSVFSAFPVFNEVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DELKGFIFNNFAPQASDMVGQYIDEFVSNSKQMSAVGVISLVVVALMLINSIDRTLNSIW
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDTTIRPLVFSFAIYWLILTLGPLLIGASIGVSSYIAAMLNENISLPFGLKILSFVPFFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
TWLIFTLIYTVVPNKKVKIMHSAIGALVAAVFFTLGKQAFLWYVTTFPSYQLIYGAMATL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
PIMLLWIQLSWVVILIGAQLASVLADYTLCTQGKIRVEELVAADTHEPALQQKMEKTEQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
LKTEITQQKQRLEKQG
HHHHHHHHHHHHHCCH
>Mature Secondary Structure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HHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100