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The map label for this gene is rbsC [H]

Identifier: 15603243

GI number: 15603243

Start: 1569947

End: 1570918

Strand: Reverse

Name: rbsC [H]

Synonym: PM1378

Alternate gene names: 15603243

Gene position: 1570918-1569947 (Counterclockwise)

Preceding gene: 15603244

Following gene: 15603242

Centisome position: 69.59

GC content: 44.65

Gene sequence:

>972_bases
ATGGGAACAACACAACCGGTTAAACCGGGTTTTAAAAAACTGGCAATTGCAGATGCGATGCAGGCAATGGGGATTTTACC
CATCTTGATTTTAATTGTGATCGTGTTTTCTTTTGTGGCACCAAACTTTATGACAGAAGCTAATATGATGAATATTACTC
GTCAAGCATCAATTAATATTGTGTTAGCCGCAGGGATGACATTTGTGATTTTAACGGGCGGGATTGACCTTTCAGTTGGT
TCGATTTTAGGGGTGACGGCGGTGATTGGACTGGTTACCTCGCTCAATCCCGCATTGGCAGAATTTGCGGTCCCGTTAGC
GTTACTCGCGGGTTTAGGTATGGGGGTATTTAATGGTTTATTGGTTGCGTATGCAGGTCTACCTCCATTTATTGTCACGC
TAGGTACATATACTGCATTACGTGGCGCAGCCTATTTAGTAGCAGATGGGACAACGGTGATCAACTCTAAAATCTCATTC
AGTTGGATAGGAAATGGTTATCTTGGCTCGGTACCTTGGCTAGTGATTATCGCCTTTGCCGTGATTGCCGTGTGCTGGTT
TATTTTACGTCGCACGACGTTAGGCACCCATATTTATGCGGTCGGGGGTAACTTGCAAGCCGCACGTTTAACAGGTATCA
AAGTCTCTTTAGTCTTAATCTTCGTTTACGCTGCCAGCGGATTATTATCTGGCTTAGGCGGCGTAATGAGTGCATCTCGT
TTGTATAGCGCCAATGGTAATCTTGGTGTAGGCTATGAACTTGATGCAATTGCAGCCGTTATTTTAGGTGGCACGAGTTT
CGTGGGCGGTATCGGAACCATTACGGGGACGCTCATCGGTGCATTAATTATTGCGACTTTAAATAATGGTATGACTTTAA
TGGGAGTGTCATATTTCTGGCAGCTCGTTATTAAAGGTGGGGTAATCATCGTGGCAGTATTGATCGACAAGTACCGTACC
CGTTCAGCTTAA

Upstream 100 bases:

>100_bases
TAGAAGGCGATGACATTAATCAAGAGCGTATCATGGCATTTGCTTGTGGCGCACAATCATAATAAAGAGATAAAAAGAAC
ATCATTTAGGAGAAGTAACC

Downstream 100 bases:

>100_bases
ACAACATCCAATATAGGAGACGTTATAATGAAATTAAAAACATTAGCAGTATCTTTAATGTTAGCCATGGCACCTTTTGC
ACAAGCGAAAGAATTAAAAT

Product: hypothetical protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MGTTQPVKPGFKKLAIADAMQAMGILPILILIVIVFSFVAPNFMTEANMMNITRQASINIVLAAGMTFVILTGGIDLSVG
SILGVTAVIGLVTSLNPALAEFAVPLALLAGLGMGVFNGLLVAYAGLPPFIVTLGTYTALRGAAYLVADGTTVINSKISF
SWIGNGYLGSVPWLVIIAFAVIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLVLIFVYAASGLLSGLGGVMSASR
LYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLIGALIIATLNNGMTLMGVSYFWQLVIKGGVIIVAVLIDKYRT
RSA

Sequences:

>Translated_323_residues
MGTTQPVKPGFKKLAIADAMQAMGILPILILIVIVFSFVAPNFMTEANMMNITRQASINIVLAAGMTFVILTGGIDLSVG
SILGVTAVIGLVTSLNPALAEFAVPLALLAGLGMGVFNGLLVAYAGLPPFIVTLGTYTALRGAAYLVADGTTVINSKISF
SWIGNGYLGSVPWLVIIAFAVIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLVLIFVYAASGLLSGLGGVMSASR
LYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLIGALIIATLNNGMTLMGVSYFWQLVIKGGVIIVAVLIDKYRT
RSA
>Mature_322_residues
GTTQPVKPGFKKLAIADAMQAMGILPILILIVIVFSFVAPNFMTEANMMNITRQASINIVLAAGMTFVILTGGIDLSVGS
ILGVTAVIGLVTSLNPALAEFAVPLALLAGLGMGVFNGLLVAYAGLPPFIVTLGTYTALRGAAYLVADGTTVINSKISFS
WIGNGYLGSVPWLVIIAFAVIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLVLIFVYAASGLLSGLGGVMSASRL
YSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLIGALIIATLNNGMTLMGVSYFWQLVIKGGVIIVAVLIDKYRTR
SA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=43.167701863354, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1790524, Length=331, Percent_Identity=38.6706948640483, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1788896, Length=326, Percent_Identity=35.5828220858896, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI145693152, Length=302, Percent_Identity=34.4370860927152, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=37.6506024096386, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789992, Length=384, Percent_Identity=30.7291666666667, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87082395, Length=283, Percent_Identity=36.0424028268551, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI145693214, Length=251, Percent_Identity=38.2470119521912, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787793, Length=293, Percent_Identity=33.4470989761092, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787794, Length=300, Percent_Identity=30, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33322; Mature: 33191

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTTQPVKPGFKKLAIADAMQAMGILPILILIVIVFSFVAPNFMTEANMMNITRQASINI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEE
VLAAGMTFVILTGGIDLSVGSILGVTAVIGLVTSLNPALAEFAVPLALLAGLGMGVFNGL
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVAYAGLPPFIVTLGTYTALRGAAYLVADGTTVINSKISFSWIGNGYLGSVPWLVIIAFA
HHHHCCCCHHHHHHHHHHHHHCCEEEEECCCEEEECCEEEEEECCCCCCHHHHHHHHHHH
VIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLVLIFVYAASGLLSGLGGVMSASR
HHHHHHHHHHHHHCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLIGALIIATLNNGMTLMGVSYFW
HEECCCCCCCCEEHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
QLVIKGGVIIVAVLIDKYRTRSA
HHHHHCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GTTQPVKPGFKKLAIADAMQAMGILPILILIVIVFSFVAPNFMTEANMMNITRQASINI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEE
VLAAGMTFVILTGGIDLSVGSILGVTAVIGLVTSLNPALAEFAVPLALLAGLGMGVFNGL
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVAYAGLPPFIVTLGTYTALRGAAYLVADGTTVINSKISFSWIGNGYLGSVPWLVIIAFA
HHHHCCCCHHHHHHHHHHHHHCCEEEEECCCEEEECCEEEEEECCCCCCHHHHHHHHHHH
VIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLVLIFVYAASGLLSGLGGVMSASR
HHHHHHHHHHHHHCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLIGALIIATLNNGMTLMGVSYFW
HEECCCCCCCCEEHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
QLVIKGGVIIVAVLIDKYRTRSA
HHHHHCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]