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The map label for this gene is ygbM [C]

Identifier: 15603228

GI number: 15603228

Start: 1554407

End: 1555189

Strand: Reverse

Name: ygbM [C]

Synonym: PM1363

Alternate gene names: 15603228

Gene position: 1555189-1554407 (Counterclockwise)

Preceding gene: 15603229

Following gene: 15603227

Centisome position: 68.89

GC content: 40.87

Gene sequence:

>783_bases
ATGCCAAAATTTGCTGCAAATTTAACCATGATGTTTACTGAAGTGCCTTTTTTAGATCGTTTTGAAGCGGCGTCGAAAGC
GGGCTTTAAATATGTGGAATATTTATGGCCTTATGACTATCCCGCCTCAGTGTTAAAAGAAAAACTGGTGCAATATGGGC
TGAAGCAAGTGTTATTTAATACGGCTGCGGGAAATATTGATCAAGGGGAGTGGGGCGTGTCAGCGATTCCGGGACGCGAA
CAAGACAGTCATCGTGATATTGATTTAGCCCTGGAATATGCGTTAGCACTCGATTGCCCGAATGTTCATATTATGGCAGC
GGTTGTACCAGAAGGTGCGGATCGCGAGCTGTATAAACGTACCTTTGTGCAGAATCTTCGTTACGCGGCAGAAAAATTCA
AACCGCATGGTATTAAGATTCTACTCGAAGCCTTAAGTCCACAAGTGAAACCAAATTATTTGCTAAAAAGTCAATTTGAT
ACATTAGACATTGTGAATTTAGTTGATCGGGATAATGTCTTTATCCAGCTTGATTATTTTCATGCCCAAAATGTCGATGG
CAAGTTGTCACAGCTGACAGATTTGTTGAAAGACAAAGTGGCACATATTCAAATTGCCTCGGTACCAGATCGTCATGAGC
CGAATGAAGGAGAAATTAACTACACTTATTTATTTGATAAGTTAGATCAAATGGGCTATCGCGGCTTTATTGGCTGTGAA
TATAAGCCAAAAATCGAAACTGTCGTCGGATTAGATTGGTTTGCGCCTTATAAAGACGCGTAA

Upstream 100 bases:

>100_bases
TTAGAGGAAACCGCAAAATTGTATTTCCTCTTAAAAGGCCAACAAGTTCGTTATCTGACCGATGACGAAGTGAAAGATCT
CGAAAAGAGGGGAAAATAGT

Downstream 100 bases:

>100_bases
GTCAGGAGCGCTAAGATGAATTATCAATTACTGTCTTATCCGTTAGATATCAAGGATCCCGGGTTTCCCGGGGAGCCGAC
ACTGACTTTCGAAAGTAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPKFAANLTMMFTEVPFLDRFEAASKAGFKYVEYLWPYDYPASVLKEKLVQYGLKQVLFNTAAGNIDQGEWGVSAIPGRE
QDSHRDIDLALEYALALDCPNVHIMAAVVPEGADRELYKRTFVQNLRYAAEKFKPHGIKILLEALSPQVKPNYLLKSQFD
TLDIVNLVDRDNVFIQLDYFHAQNVDGKLSQLTDLLKDKVAHIQIASVPDRHEPNEGEINYTYLFDKLDQMGYRGFIGCE
YKPKIETVVGLDWFAPYKDA

Sequences:

>Translated_260_residues
MPKFAANLTMMFTEVPFLDRFEAASKAGFKYVEYLWPYDYPASVLKEKLVQYGLKQVLFNTAAGNIDQGEWGVSAIPGRE
QDSHRDIDLALEYALALDCPNVHIMAAVVPEGADRELYKRTFVQNLRYAAEKFKPHGIKILLEALSPQVKPNYLLKSQFD
TLDIVNLVDRDNVFIQLDYFHAQNVDGKLSQLTDLLKDKVAHIQIASVPDRHEPNEGEINYTYLFDKLDQMGYRGFIGCE
YKPKIETVVGLDWFAPYKDA
>Mature_259_residues
PKFAANLTMMFTEVPFLDRFEAASKAGFKYVEYLWPYDYPASVLKEKLVQYGLKQVLFNTAAGNIDQGEWGVSAIPGREQ
DSHRDIDLALEYALALDCPNVHIMAAVVPEGADRELYKRTFVQNLRYAAEKFKPHGIKILLEALSPQVKPNYLLKSQFDT
LDIVNLVDRDNVFIQLDYFHAQNVDGKLSQLTDLLKDKVAHIQIASVPDRHEPNEGEINYTYLFDKLDQMGYRGFIGCEY
KPKIETVVGLDWFAPYKDA

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=264, Percent_Identity=39.7727272727273, Blast_Score=193, Evalue=1e-49,
Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=38.6831275720165, Blast_Score=167, Evalue=7e-42,
Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=60.077519379845, Blast_Score=330, Evalue=4e-92,
Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=39.1472868217054, Blast_Score=199, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17552022, Length=240, Percent_Identity=38.75, Blast_Score=183, Evalue=8e-47,
Organism=Drosophila melanogaster, GI17530883, Length=259, Percent_Identity=32.8185328185328, Blast_Score=151, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 29708; Mature: 29577

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFAANLTMMFTEVPFLDRFEAASKAGFKYVEYLWPYDYPASVLKEKLVQYGLKQVLFN
CCCHHHHEEEEEECCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TAAGNIDQGEWGVSAIPGREQDSHRDIDLALEYALALDCPNVHIMAAVVPEGADRELYKR
HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEHHEECCCCEEEEEEECCCCCCHHHHHH
TFVQNLRYAAEKFKPHGIKILLEALSPQVKPNYLLKSQFDTLDIVNLVDRDNVFIQLDYF
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHCCCCCEEEEEEEE
HAQNVDGKLSQLTDLLKDKVAHIQIASVPDRHEPNEGEINYTYLFDKLDQMGYRGFIGCE
ECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEEHHHHHHHCCCCCEECCC
YKPKIETVVGLDWFAPYKDA
CCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
PKFAANLTMMFTEVPFLDRFEAASKAGFKYVEYLWPYDYPASVLKEKLVQYGLKQVLFN
CCHHHHEEEEEECCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TAAGNIDQGEWGVSAIPGREQDSHRDIDLALEYALALDCPNVHIMAAVVPEGADRELYKR
HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEHHEECCCCEEEEEEECCCCCCHHHHHH
TFVQNLRYAAEKFKPHGIKILLEALSPQVKPNYLLKSQFDTLDIVNLVDRDNVFIQLDYF
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHCCCCCEEEEEEEE
HAQNVDGKLSQLTDLLKDKVAHIQIASVPDRHEPNEGEINYTYLFDKLDQMGYRGFIGCE
ECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEEHHHHHHHCCCCCEECCC
YKPKIETVVGLDWFAPYKDA
CCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]