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The map label for this gene is yijC [C]

Identifier: 15603210

GI number: 15603210

Start: 1537925

End: 1538536

Strand: Reverse

Name: yijC [C]

Synonym: PM1345

Alternate gene names: 15603210

Gene position: 1538536-1537925 (Counterclockwise)

Preceding gene: 15603211

Following gene: 15603207

Centisome position: 68.15

GC content: 42.65

Gene sequence:

>612_bases
ATGGGTGTGAGAGCATTACAAAAAGAAAAAACCCGTCGCGCATTAATTGATGCCGCTTTTAATCAGCTGACCGCGGATAA
AAGTTTTTCCAATTTAAGTTTGCGTGAAGTGGCGCGCGAAGCGGGTATCGCAGCCACCTCTTTTTACCGCCATTTTAGAG
ATATGGACGAACTTGGTTTAACCATGGTTGATGAGGCGGGTTTAGTATTACGTCAGTTAATGCGTCAAGCTCGAAAACGC
TTAGAAAAAGGCGGAAGTGTGATAGCCATTTCCGTCGAAACTTTTTTTGAATTTATCGCCAATAATCCCAACATGTTCCG
TCTTTTACTCCGTGAAAGTTCAGGTACTTCACAAGCATTTCGCACTGCTACAGCACGCGAAATAAAACACTTTGTTGACG
AACTAAGCGAATATATCGCACAACGTAATAGCCACTCACAATATGTGGCACAAGTACAAGCGGAAGGCATGGTCACCATT
GTGTTTACTGCTGGCGCCAATGCTTTAGACATGGAAAAAACAGAGCGAGAACAGCTCAAACAAAGAGTCATTTTACAATT
GCGTATGTTAGCTAAAGGGGCAGAATATACACATCACAAAGAGAGCTATTAG

Upstream 100 bases:

>100_bases
GGGTTCTCCGTTACGAAATCGCTACGAGAAAATTGCACAGACCATTAGTCATTCAGTACAAGACGTATTGGACTAATTCT
GAAGTCAGGAAAATATCAAT

Downstream 100 bases:

>100_bases
CTGTTAGAGCACGATAAAAGACATGAAGGGCTACTTGATTACTTGAAAATTAACGTCGGTAGTTTGTCGATGAATGCCGT
TGGTGCGGGTTTATCACAAA

Product: DNA-binding transcriptional repressor FabR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MGVRALQKEKTRRALIDAAFNQLTADKSFSNLSLREVAREAGIAATSFYRHFRDMDELGLTMVDEAGLVLRQLMRQARKR
LEKGGSVIAISVETFFEFIANNPNMFRLLLRESSGTSQAFRTATAREIKHFVDELSEYIAQRNSHSQYVAQVQAEGMVTI
VFTAGANALDMEKTEREQLKQRVILQLRMLAKGAEYTHHKESY

Sequences:

>Translated_203_residues
MGVRALQKEKTRRALIDAAFNQLTADKSFSNLSLREVAREAGIAATSFYRHFRDMDELGLTMVDEAGLVLRQLMRQARKR
LEKGGSVIAISVETFFEFIANNPNMFRLLLRESSGTSQAFRTATAREIKHFVDELSEYIAQRNSHSQYVAQVQAEGMVTI
VFTAGANALDMEKTEREQLKQRVILQLRMLAKGAEYTHHKESY
>Mature_202_residues
GVRALQKEKTRRALIDAAFNQLTADKSFSNLSLREVAREAGIAATSFYRHFRDMDELGLTMVDEAGLVLRQLMRQARKRL
EKGGSVIAISVETFFEFIANNPNMFRLLLRESSGTSQAFRTATAREIKHFVDELSEYIAQRNSHSQYVAQVQAEGMVTIV
FTAGANALDMEKTEREQLKQRVILQLRMLAKGAEYTHHKESY

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693209, Length=201, Percent_Identity=67.6616915422886, Blast_Score=281, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23094; Mature: 22963

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVRALQKEKTRRALIDAAFNQLTADKSFSNLSLREVAREAGIAATSFYRHFRDMDELGL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCC
TMVDEAGLVLRQLMRQARKRLEKGGSVIAISVETFFEFIANNPNMFRLLLRESSGTSQAF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHEEHEECCCCCCHHHH
RTATAREIKHFVDELSEYIAQRNSHSQYVAQVQAEGMVTIVFTAGANALDMEKTEREQLK
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
QRVILQLRMLAKGAEYTHHKESY
HHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GVRALQKEKTRRALIDAAFNQLTADKSFSNLSLREVAREAGIAATSFYRHFRDMDELGL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCC
TMVDEAGLVLRQLMRQARKRLEKGGSVIAISVETFFEFIANNPNMFRLLLRESSGTSQAF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHEEHEECCCCCCHHHH
RTATAREIKHFVDELSEYIAQRNSHSQYVAQVQAEGMVTIVFTAGANALDMEKTEREQLK
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
QRVILQLRMLAKGAEYTHHKESY
HHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]