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The map label for this gene is rarD [C]

Identifier: 15603146

GI number: 15603146

Start: 1473445

End: 1474320

Strand: Reverse

Name: rarD [C]

Synonym: PM1281

Alternate gene names: 15603146

Gene position: 1474320-1473445 (Counterclockwise)

Preceding gene: 15603148

Following gene: 15603138

Centisome position: 65.31

GC content: 39.61

Gene sequence:

>876_bases
ATGATAAAAGGCATCTTGCTTTCGTTATCAGCCTCAGTGCTGTTTGGTTATCTTTATTATTTCTCAACCCTTTTACAGCC
ACTTGGTGGGGAAGATATCTTCGGTTTTCGGATTATTTTTACGCTACCTTTTGTTATTGCAGCCGTCTTTCTCTTCAAAC
AAAAACAGGCTGTAGGTCAATATTTTGTACGCATTAAACAACAACCCTTATTGATCTTCGGTTTCTTGTTTAACTCTGCC
ATGATGGGCATTCAAATTTGGCTATTTTTATGGGCGCCGAATAATGGCAGTGCATTAAGCGTGTCGTTTGGTTATTTGTT
ACTCCCTTTAACGATGGTACTTGTCGGGCGTCTGGTCTTTAAAGAACACATTTCTAGAGTGAAATTTCTTGCTGTAGTCA
TCGCTGCCATTGGCGTCTTTTCTAATATTCTGCTAAAAGGGGGACTTTCTTGGGAAGCGCTGTTAGTGAGCTTCGGTTAC
AGCACCTATTTCGCTACAAGAAAAATATTGAAAATTAACGATTTAGCCGGCTTTTGTTTGGAAATGTCATTATTATTGCC
AGTATGTATTTACTTCGCATGGCAAGTGGATCTTCAGGCGGTACAACAAGCCAATGAAAATATTTTGCTGTTATTGGTGT
TATTAGGCTTAATTAGTGGCGTAGCGTTGAATACCTATATCGTGGCAAGTAGCCTATTACCGATCAATGTCCTCGGCTTA
CTCGGCTATGCCGAGCCGATTATGATGTTGTTTGTGTCTTTTCTGATTGGCGAACAACTTGACAGCGAAACCATTCCCCT
CTTTATTTGCTTAATGATCTCGATGATTTTATTTATGAGTGAAGGCTTGGTGAGATTAAAGCGGCGTTATAAATAA

Upstream 100 bases:

>100_bases
AAAAAACGACATAAGAACAAAGAAATAATGAATTTCTTTTAAAAATAAGATAGGCTTTGACATTCATCTAACAACATTGC
GATATTATTGGAGAAATAAA

Downstream 100 bases:

>100_bases
CATGATCTGCACCTAAAACTAGGTGCAGAAAAATACGCAAAACACTGATTAGCGACAGAGATGGGTCTTCCATTCCGATA
ACGTGGCATCTACATCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MIKGILLSLSASVLFGYLYYFSTLLQPLGGEDIFGFRIIFTLPFVIAAVFLFKQKQAVGQYFVRIKQQPLLIFGFLFNSA
MMGIQIWLFLWAPNNGSALSVSFGYLLLPLTMVLVGRLVFKEHISRVKFLAVVIAAIGVFSNILLKGGLSWEALLVSFGY
STYFATRKILKINDLAGFCLEMSLLLPVCIYFAWQVDLQAVQQANENILLLLVLLGLISGVALNTYIVASSLLPINVLGL
LGYAEPIMMLFVSFLIGEQLDSETIPLFICLMISMILFMSEGLVRLKRRYK

Sequences:

>Translated_291_residues
MIKGILLSLSASVLFGYLYYFSTLLQPLGGEDIFGFRIIFTLPFVIAAVFLFKQKQAVGQYFVRIKQQPLLIFGFLFNSA
MMGIQIWLFLWAPNNGSALSVSFGYLLLPLTMVLVGRLVFKEHISRVKFLAVVIAAIGVFSNILLKGGLSWEALLVSFGY
STYFATRKILKINDLAGFCLEMSLLLPVCIYFAWQVDLQAVQQANENILLLLVLLGLISGVALNTYIVASSLLPINVLGL
LGYAEPIMMLFVSFLIGEQLDSETIPLFICLMISMILFMSEGLVRLKRRYK
>Mature_291_residues
MIKGILLSLSASVLFGYLYYFSTLLQPLGGEDIFGFRIIFTLPFVIAAVFLFKQKQAVGQYFVRIKQQPLLIFGFLFNSA
MMGIQIWLFLWAPNNGSALSVSFGYLLLPLTMVLVGRLVFKEHISRVKFLAVVIAAIGVFSNILLKGGLSWEALLVSFGY
STYFATRKILKINDLAGFCLEMSLLLPVCIYFAWQVDLQAVQQANENILLLLVLLGLISGVALNTYIVASSLLPINVLGL
LGYAEPIMMLFVSFLIGEQLDSETIPLFICLMISMILFMSEGLVRLKRRYK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=25.8503401360544, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1281_PASMU (Q9CLF4)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246218.1
- GeneID:   1244628
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1281
- NMPDR:   fig|272843.1.peg.1281
- HOGENOM:   HBG649355
- OMA:   GLLSYVE
- ProtClustDB:   CLSK870434
- BioCyc:   PMUL272843:PM1281-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620
- InterPro:   IPR004626
- TIGRFAMs:   TIGR00688

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 32531; Mature: 32531

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd9ab8d0)-; HASH(0xe3e4828)-; HASH(0xe5305c0)-; HASH(0xd7e5b4c)-; HASH(0xd473f7c)-; HASH(0xc767ee4)-; HASH(0xdc1e568)-; HASH(0xde624d8)-; HASH(0xdcf43b4)-; HASH(0xe8131f4)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGILLSLSASVLFGYLYYFSTLLQPLGGEDIFGFRIIFTLPFVIAAVFLFKQKQAVGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFVRIKQQPLLIFGFLFNSAMMGIQIWLFLWAPNNGSALSVSFGYLLLPLTMVLVGRLVF
HHHHHCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
KEHISRVKFLAVVIAAIGVFSNILLKGGLSWEALLVSFGYSTYFATRKILKINDLAGFCL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
EMSLLLPVCIYFAWQVDLQAVQQANENILLLLVLLGLISGVALNTYIVASSLLPINVLGL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LGYAEPIMMLFVSFLIGEQLDSETIPLFICLMISMILFMSEGLVRLKRRYK
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MIKGILLSLSASVLFGYLYYFSTLLQPLGGEDIFGFRIIFTLPFVIAAVFLFKQKQAVGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFVRIKQQPLLIFGFLFNSAMMGIQIWLFLWAPNNGSALSVSFGYLLLPLTMVLVGRLVF
HHHHHCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
KEHISRVKFLAVVIAAIGVFSNILLKGGLSWEALLVSFGYSTYFATRKILKINDLAGFCL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
EMSLLLPVCIYFAWQVDLQAVQQANENILLLLVLLGLISGVALNTYIVASSLLPINVLGL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LGYAEPIMMLFVSFLIGEQLDSETIPLFICLMISMILFMSEGLVRLKRRYK
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100