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The map label for this gene is lsrC [H]

Identifier: 15603140

GI number: 15603140

Start: 1468368

End: 1469360

Strand: Direct

Name: lsrC [H]

Synonym: PM1275

Alternate gene names: 15603140

Gene position: 1468368-1469360 (Clockwise)

Preceding gene: 15603139

Following gene: 15603141

Centisome position: 65.04

GC content: 43.1

Gene sequence:

>993_bases
ATGTGGAAATTTATACAAGATAACCGTGAATTAACCATTGTCTTTGCGATCGGATTGCTGTTTACCTTACTCAGTCTTGG
AGGCAGCGGCTTTCATTTACAAACGTTGGCAATGATTTTTAACTCGGCACAAATTGTGATTTTGCTGGCGATTGGTGCCA
CGTTTGTCATTTTGACACGCAATATTGATGTGTCGGTGGGTTCAACGATGGGCTTATGTGCCGTCATTGCTGGTAGTTTA
CTTAATGCCGGATTTGGTGCGAGCGCTTTTGTGATTACTCTATGTTGTGGGCTGTTGGCTGGTTTATTTAATGGCATTTT
AGTCACACTACTACGTATCCCTGCCATTGTGGCGACCTTAGGAACACTTGGCTTGTATAAAGGTATTATGTTGCTAATTA
CAGGTGGTAAATGGATTGAGGGCTTACCACAGGATTTAAAAACCTTGTCTGCGCCAGCATTTTTGCACATTTCGCCGATC
GGTTGGCTACTTTTAGGCTTGATTGGCTTAACGTATTTCTTTTTAACCAAAATGAAAGCAGGGCGTGACTTTTACGCGGT
GGGTGACAATTTGCAAGGGGCATTACAACTGGGAGTGCGCGTGAATCAAGTTCGCATCGCTGCATTTGCGATTAACGGTA
CGATGGCGGCATTAGCCGGTATTGTGTTTGCCTCACAAATCGGCTTTGTGCCTAACTCAACGGGGAATGGATTAGAAATG
AAAGCGATTGCCGCTTGTGTATTAGGTGGGATTAGCTTACTTGGTGGGGCGGGGAACATTATTGGTGCTGTTTTAGGTGC
CTATTTCCTGATCCAAATTGACTCTATTTTGGTGTTGTTAAAAGTGCCTGCTTATTGGAATAACTTTGTAGCAGGTTTAG
TGCTCTTAGCGGTCTTGGTGTTTGATGGACGTATTCGCGTGATGATTAACAATAATATTAAACTTCAGCGTTATGCCCGT
TTCTTAAAAGACGATCAAGATGCGGTGAAATAA

Upstream 100 bases:

>100_bases
TGATGGGCAGCTTAGTGAATCGCTAGTGGGATCGGCGATCAATACAGCGAATATTATGAATATGGCATTTGGCGCGACAA
AGGCATAAGGGGCATAAGGT

Downstream 100 bases:

>100_bases
GGGGAAGCAAAGGATGTTTAACATGAAAAAATACAGTTGGGAAATCGCCCTATTTTGCTTAGTGATTATTGAAATTTTAG
GCTTTGGTATGTTTAATCCG

Product: hypothetical protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MWKFIQDNRELTIVFAIGLLFTLLSLGGSGFHLQTLAMIFNSAQIVILLAIGATFVILTRNIDVSVGSTMGLCAVIAGSL
LNAGFGASAFVITLCCGLLAGLFNGILVTLLRIPAIVATLGTLGLYKGIMLLITGGKWIEGLPQDLKTLSAPAFLHISPI
GWLLLGLIGLTYFFLTKMKAGRDFYAVGDNLQGALQLGVRVNQVRIAAFAINGTMAALAGIVFASQIGFVPNSTGNGLEM
KAIAACVLGGISLLGGAGNIIGAVLGAYFLIQIDSILVLLKVPAYWNNFVAGLVLLAVLVFDGRIRVMINNNIKLQRYAR
FLKDDQDAVK

Sequences:

>Translated_330_residues
MWKFIQDNRELTIVFAIGLLFTLLSLGGSGFHLQTLAMIFNSAQIVILLAIGATFVILTRNIDVSVGSTMGLCAVIAGSL
LNAGFGASAFVITLCCGLLAGLFNGILVTLLRIPAIVATLGTLGLYKGIMLLITGGKWIEGLPQDLKTLSAPAFLHISPI
GWLLLGLIGLTYFFLTKMKAGRDFYAVGDNLQGALQLGVRVNQVRIAAFAINGTMAALAGIVFASQIGFVPNSTGNGLEM
KAIAACVLGGISLLGGAGNIIGAVLGAYFLIQIDSILVLLKVPAYWNNFVAGLVLLAVLVFDGRIRVMINNNIKLQRYAR
FLKDDQDAVK
>Mature_330_residues
MWKFIQDNRELTIVFAIGLLFTLLSLGGSGFHLQTLAMIFNSAQIVILLAIGATFVILTRNIDVSVGSTMGLCAVIAGSL
LNAGFGASAFVITLCCGLLAGLFNGILVTLLRIPAIVATLGTLGLYKGIMLLITGGKWIEGLPQDLKTLSAPAFLHISPI
GWLLLGLIGLTYFFLTKMKAGRDFYAVGDNLQGALQLGVRVNQVRIAAFAINGTMAALAGIVFASQIGFVPNSTGNGLEM
KAIAACVLGGISLLGGAGNIIGAVLGAYFLIQIDSILVLLKVPAYWNNFVAGLVLLAVLVFDGRIRVMINNNIKLQRYAR
FLKDDQDAVK

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=329, Percent_Identity=66.2613981762918, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1789992, Length=359, Percent_Identity=29.8050139275766, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790524, Length=272, Percent_Identity=30.5147058823529, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790191, Length=286, Percent_Identity=30.4195804195804, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788896, Length=301, Percent_Identity=28.9036544850498, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI87082395, Length=330, Percent_Identity=28.7878787878788, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI145693152, Length=267, Percent_Identity=29.2134831460674, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=35.0393700787402, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787794, Length=292, Percent_Identity=31.5068493150685, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788471, Length=282, Percent_Identity=29.4326241134752, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34890; Mature: 34890

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKFIQDNRELTIVFAIGLLFTLLSLGGSGFHLQTLAMIFNSAQIVILLAIGATFVILTR
CCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHEEEEECCCEEEEEEE
NIDVSVGSTMGLCAVIAGSLLNAGFGASAFVITLCCGLLAGLFNGILVTLLRIPAIVATL
CCCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLGLYKGIMLLITGGKWIEGLPQDLKTLSAPAFLHISPIGWLLLGLIGLTYFFLTKMKA
HHHHHHHHHEEEEECCHHHHCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHC
GRDFYAVGDNLQGALQLGVRVNQVRIAAFAINGTMAALAGIVFASQIGFVPNSTGNGLEM
CCCEEEECCCCHHHHHHCEEEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHH
KAIAACVLGGISLLGGAGNIIGAVLGAYFLIQIDSILVLLKVPAYWNNFVAGLVLLAVLV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FDGRIRVMINNNIKLQRYARFLKDDQDAVK
HCCEEEEEECCCEEHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MWKFIQDNRELTIVFAIGLLFTLLSLGGSGFHLQTLAMIFNSAQIVILLAIGATFVILTR
CCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHEEEEECCCEEEEEEE
NIDVSVGSTMGLCAVIAGSLLNAGFGASAFVITLCCGLLAGLFNGILVTLLRIPAIVATL
CCCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLGLYKGIMLLITGGKWIEGLPQDLKTLSAPAFLHISPIGWLLLGLIGLTYFFLTKMKA
HHHHHHHHHEEEEECCHHHHCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHC
GRDFYAVGDNLQGALQLGVRVNQVRIAAFAINGTMAALAGIVFASQIGFVPNSTGNGLEM
CCCEEEECCCCHHHHHHCEEEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHH
KAIAACVLGGISLLGGAGNIIGAVLGAYFLIQIDSILVLLKVPAYWNNFVAGLVLLAVLV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FDGRIRVMINNNIKLQRYARFLKDDQDAVK
HCCEEEEEECCCEEHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]