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The map label for this gene is rimN

Identifier: 15603135

GI number: 15603135

Start: 1462577

End: 1463128

Strand: Direct

Name: rimN

Synonym: PM1270

Alternate gene names: 15603135

Gene position: 1462577-1463128 (Clockwise)

Preceding gene: 15603134

Following gene: 15603136

Centisome position: 64.79

GC content: 44.93

Gene sequence:

>552_bases
ATGAACATTCAACAAATCGTCGAACAACTTAAACAAAATGAAGTCGTCGCCTATCCGACCGAAGCGGTCTTTGGTTTAGG
TTGTAATCCCAATAGCGAAAGTGCGGTGCAAAAATTATTGGTGTTGAAACAACGCTCCGTCGAAAAAGGGCTGATTTTAG
TTGCGCCTTGTTTGGACTATTTCTTGCCCTTTATAGACACCACAGCATTTAGCCAAGCCGATTGGGATCGTTTACAGGCT
AAATATGATCGCCCTACGACGTGGGTTGTGCCAGCGAAAACGACGACGCCCAAATTTTTAACAGGACAGTTTGACAGCAT
TGCGGTGCGTTTATGTGATCATCCGGCAGTGAAACAGCTGTGTGAACAAGCCGGTTTTGCGTTGACTTCAACCAGTGCCA
ATTTGACGACTTTGCCACCTTGTCGTACGGCAGAAGAAGTCAAAACACAATTCGGGGCGGATTTTCCGGTATTGGATTTG
CCTGTAGGAGAGGCAACCAATCCTTCTGAAATTCGTGATCTTTTTACTCATCAACTGTTTAGACAAGGTTAA

Upstream 100 bases:

>100_bases
GTTCAGTTTGTACCTTGAAAAAAGAAACGGACACTCAGCGCACTTTTCAATGTGCGAACAAACGTTGTCGCCATATTTTT
AACTCGGAAATTACATCTTA

Downstream 100 bases:

>100_bases
ACCATGGATAAATACGCGGTATGGGGCAATCCAATCGCCCAAAGTAAATCACCACAAATTCATCAAATCTTTGCCAATCA
AACTCAGCAACAGATGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNIQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRSVEKGLILVAPCLDYFLPFIDTTAFSQADWDRLQA
KYDRPTTWVVPAKTTTPKFLTGQFDSIAVRLCDHPAVKQLCEQAGFALTSTSANLTTLPPCRTAEEVKTQFGADFPVLDL
PVGEATNPSEIRDLFTHQLFRQG

Sequences:

>Translated_183_residues
MNIQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRSVEKGLILVAPCLDYFLPFIDTTAFSQADWDRLQA
KYDRPTTWVVPAKTTTPKFLTGQFDSIAVRLCDHPAVKQLCEQAGFALTSTSANLTTLPPCRTAEEVKTQFGADFPVLDL
PVGEATNPSEIRDLFTHQLFRQG
>Mature_183_residues
MNIQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRSVEKGLILVAPCLDYFLPFIDTTAFSQADWDRLQA
KYDRPTTWVVPAKTTTPKFLTGQFDSIAVRLCDHPAVKQLCEQAGFALTSTSANLTTLPPCRTAEEVKTQFGADFPVLDL
PVGEATNPSEIRDLFTHQLFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=181, Percent_Identity=53.0386740331492, Blast_Score=197, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_PASMU (Q9CLG4)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246207.1
- HSSP:   P45748
- ProteinModelPortal:   Q9CLG4
- GeneID:   1244617
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1270
- NMPDR:   fig|272843.1.peg.1270
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   CLSK2517345
- BioCyc:   PMUL272843:PM1270-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20288; Mature: 20288

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRSVEKGLILVAPCLDY
CCHHHHHHHHHHCCEEEECCHHEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHH
FLPFIDTTAFSQADWDRLQAKYDRPTTWVVPAKTTTPKFLTGQFDSIAVRLCDHPAVKQL
HHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHCCCHHHHHH
CEQAGFALTSTSANLTTLPPCRTAEEVKTQFGADFPVLDLPVGEATNPSEIRDLFTHQLF
HHHHCCEEEECCCCCEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHH
RQG
HCC
>Mature Secondary Structure
MNIQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRSVEKGLILVAPCLDY
CCHHHHHHHHHHCCEEEECCHHEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHH
FLPFIDTTAFSQADWDRLQAKYDRPTTWVVPAKTTTPKFLTGQFDSIAVRLCDHPAVKQL
HHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHCCCHHHHHH
CEQAGFALTSTSANLTTLPPCRTAEEVKTQFGADFPVLDLPVGEATNPSEIRDLFTHQLF
HHHHCCEEEECCCCCEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHH
RQG
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100