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The map label for this gene is yrdD [C]

Identifier: 15603134

GI number: 15603134

Start: 1462020

End: 1462577

Strand: Direct

Name: yrdD [C]

Synonym: PM1269

Alternate gene names: 15603134

Gene position: 1462020-1462577 (Clockwise)

Preceding gene: 15603133

Following gene: 15603135

Centisome position: 64.76

GC content: 43.55

Gene sequence:

>558_bases
ATGAGCGAACGCCTTTTTCAACACAAAAAACAACAAGAACATTGCCCTCGTTGCGATGCTGTATTACAGCTGAAGCAAGG
CAAAAAAGGGTTGTTTTTGGGCTGTTCGGCGTATCCAGCATGTGATTATATTAAGCCACTTTCATTTCAATCAGAAAGTA
AAATCATTAAAGTCTTAGAAGAAACCTGTCCTGAATGTCGACATCCTTTGGTATTGAAACAAGGGTATTTTGGCATGTTT
ATTGGTTGTAGCCACTATCCAGAATGCCATTTTGTGGTGCATGACGAACCCGAGGAACAAGCGGAAGAAACGATCCCTTG
TCCCGATTGCCAACAAGGCGGATTGGTGGCTCGTCGTGGTCGTCAGGGCAAAGTCTTTTATGGCTGTGATCGCTTTCCTC
ATTGCAAATTTACCTTAGCGGCTAAGCCCTATTTGGTCGCGTGTCCAGCGTGTGGGAGTTCAGTTTGTACCTTGAAAAAA
GAAACGGACACTCAGCGCACTTTTCAATGTGCGAACAAACGTTGTCGCCATATTTTTAACTCGGAAATTACATCTTAA

Upstream 100 bases:

>100_bases
AGGGCAGTTTTAGCGGGGTGATGGGGTTGCCGGTGTGTGAAACGGTGGCATTGTTGAAAGCCTTTGGGGTAGAATTGTTT
TAATTTCATTGAGGAACACC

Downstream 100 bases:

>100_bases
TGAACATTCAACAAATCGTCGAACAACTTAAACAAAATGAAGTCGTCGCCTATCCGACCGAAGCGGTCTTTGGTTTAGGT
TGTAATCCCAATAGCGAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MSERLFQHKKQQEHCPRCDAVLQLKQGKKGLFLGCSAYPACDYIKPLSFQSESKIIKVLEETCPECRHPLVLKQGYFGMF
IGCSHYPECHFVVHDEPEEQAEETIPCPDCQQGGLVARRGRQGKVFYGCDRFPHCKFTLAAKPYLVACPACGSSVCTLKK
ETDTQRTFQCANKRCRHIFNSEITS

Sequences:

>Translated_185_residues
MSERLFQHKKQQEHCPRCDAVLQLKQGKKGLFLGCSAYPACDYIKPLSFQSESKIIKVLEETCPECRHPLVLKQGYFGMF
IGCSHYPECHFVVHDEPEEQAEETIPCPDCQQGGLVARRGRQGKVFYGCDRFPHCKFTLAAKPYLVACPACGSSVCTLKK
ETDTQRTFQCANKRCRHIFNSEITS
>Mature_184_residues
SERLFQHKKQQEHCPRCDAVLQLKQGKKGLFLGCSAYPACDYIKPLSFQSESKIIKVLEETCPECRHPLVLKQGYFGMFI
GCSHYPECHFVVHDEPEEQAEETIPCPDCQQGGLVARRGRQGKVFYGCDRFPHCKFTLAAKPYLVACPACGSSVCTLKKE
TDTQRTFQCANKRCRHIFNSEITS

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yrdD [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=184, Percent_Identity=45.6521739130435, Blast_Score=155, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 21001; Mature: 20870

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
9.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERLFQHKKQQEHCPRCDAVLQLKQGKKGLFLGCSAYPACDYIKPLSFQSESKIIKVLE
CCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
ETCPECRHPLVLKQGYFGMFIGCSHYPECHFVVHDEPEEQAEETIPCPDCQQGGLVARRG
HHHHHHCCCEEEECCCCEEEEECCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCEEEECC
RQGKVFYGCDRFPHCKFTLAAKPYLVACPACGSSVCTLKKETDTQRTFQCANKRCRHIFN
CCCCEEECCCCCCCCEEEEECCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
SEITS
HCCCC
>Mature Secondary Structure 
SERLFQHKKQQEHCPRCDAVLQLKQGKKGLFLGCSAYPACDYIKPLSFQSESKIIKVLE
CCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
ETCPECRHPLVLKQGYFGMFIGCSHYPECHFVVHDEPEEQAEETIPCPDCQQGGLVARRG
HHHHHHCCCEEEECCCCEEEEECCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCEEEECC
RQGKVFYGCDRFPHCKFTLAAKPYLVACPACGSSVCTLKKETDTQRTFQCANKRCRHIFN
CCCCEEECCCCCCCCEEEEECCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
SEITS
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]