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The map label for this gene is rbsC_2 [H]

Identifier: 15603115

GI number: 15603115

Start: 1443388

End: 1444434

Strand: Reverse

Name: rbsC_2 [H]

Synonym: PM1250

Alternate gene names: 15603115

Gene position: 1444434-1443388 (Counterclockwise)

Preceding gene: 15603116

Following gene: 15603114

Centisome position: 63.98

GC content: 44.41

Gene sequence:

>1047_bases
ATGGCTCAAACAAATATCAAATCAACTGCACTAGAGCATCCCGTCTCTATTGCGCGTGATGGATTTGCCGCTTGGTTTTC
CCAAATGCTCACCAGATATGGATTATTATGGTTGTGCTTTTTGCTTGTTATCATTTTCTCGTTAACCACCGACTCCTTTG
CGTCGATGCTAACGTTAAATGCCATTTTAGAAAGTAAATCCAAAATTGCCTTACTTGCACTCGCTGCCACCACTACAATG
ATTGTGGGCAAAATCGATTTAAACGTCGGTTTTGGTATTGTCCTGTGGCATATTCTCGCCATTACATTACAAGTCCAATT
TGGTTTCTCTTGGCAAATGGCTACCGTAACCGTATTGATTGTCGCCGCCATTTACGGACTCCTTAATGGTATTCTGGTCG
CGCTGGCGGATATTGATAGTTTCGTGGCAACCTTAGGTTCAGGCACAGTCCTTTATGCGATTGCTTTATGGCATTCTGGT
GGACGCCAAATTGTCGGTGACTTACCTGATGGTTTCATTGCCATTAACAGTACTGAAATCTTTGGCATTCCAATTTCCGC
CTTTTATGTCCTCATTATTGCGATTGTGATGTGGCTAGTGACAGAACATACTCCAACAGGGCGCTGTATGTATGCAGTGG
GAGGCAATCCTACCGCTGCCCATCTCAATGGCATCTCCATAAAAAAATACACCATTGTCCCTTTCATTGTCTCCAGTTTA
ATCACTGGCTTTACTGGCGTGTTAATTGCCGCGCAACAAGGTGTTGGACAAGCGAGCGTAGGAATGGACTATTTATTGCC
TGCACTTGTTGGCGCATTTTTAGGGAGTACTACCATCAAACCGGGGCGGATCAACGTATGGGGAACCGTGGTAGGGATTG
CTATCCTTGCGATTGGTATCTCCGGTATCCAACAATTTGGTGGGGCATTCTGGGTGGAACCATTGTTCAATGGCGCAACA
CTTTTACTGTCCATTACGATTGCCGGCTATGCACAGCGCAAACGTTTATTAAATCAAAAAGCAGTACACAAAAGAGCAAC
AAAATAA

Upstream 100 bases:

>100_bases
GTCACGTTCGCCAACTTACTGGCACTCGCTTCAGATTCCAAGTCGAGCATCAATTAATTTTTGCATTTTAGACCGCACTT
ACACTCAATAGGAGCGCACT

Downstream 100 bases:

>100_bases
CTTTGTTGTTGATACTCATCTAATACTGAGGAGAACTTTATGAAACAGCAATTTCATCGTGGTTTAAGCGCACTCGCCGC
GTTAGTCACACTCTCTTTTG

Product: RbsC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAQTNIKSTALEHPVSIARDGFAAWFSQMLTRYGLLWLCFLLVIIFSLTTDSFASMLTLNAILESKSKIALLALAATTTM
IVGKIDLNVGFGIVLWHILAITLQVQFGFSWQMATVTVLIVAAIYGLLNGILVALADIDSFVATLGSGTVLYAIALWHSG
GRQIVGDLPDGFIAINSTEIFGIPISAFYVLIIAIVMWLVTEHTPTGRCMYAVGGNPTAAHLNGISIKKYTIVPFIVSSL
ITGFTGVLIAAQQGVGQASVGMDYLLPALVGAFLGSTTIKPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGAT
LLLSITIAGYAQRKRLLNQKAVHKRATK

Sequences:

>Translated_348_residues
MAQTNIKSTALEHPVSIARDGFAAWFSQMLTRYGLLWLCFLLVIIFSLTTDSFASMLTLNAILESKSKIALLALAATTTM
IVGKIDLNVGFGIVLWHILAITLQVQFGFSWQMATVTVLIVAAIYGLLNGILVALADIDSFVATLGSGTVLYAIALWHSG
GRQIVGDLPDGFIAINSTEIFGIPISAFYVLIIAIVMWLVTEHTPTGRCMYAVGGNPTAAHLNGISIKKYTIVPFIVSSL
ITGFTGVLIAAQQGVGQASVGMDYLLPALVGAFLGSTTIKPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGAT
LLLSITIAGYAQRKRLLNQKAVHKRATK
>Mature_347_residues
AQTNIKSTALEHPVSIARDGFAAWFSQMLTRYGLLWLCFLLVIIFSLTTDSFASMLTLNAILESKSKIALLALAATTTMI
VGKIDLNVGFGIVLWHILAITLQVQFGFSWQMATVTVLIVAAIYGLLNGILVALADIDSFVATLGSGTVLYAIALWHSGG
RQIVGDLPDGFIAINSTEIFGIPISAFYVLIIAIVMWLVTEHTPTGRCMYAVGGNPTAAHLNGISIKKYTIVPFIVSSLI
TGFTGVLIAAQQGVGQASVGMDYLLPALVGAFLGSTTIKPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATL
LLSITIAGYAQRKRLLNQKAVHKRATK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=282, Percent_Identity=29.0780141843972, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790524, Length=291, Percent_Identity=27.4914089347079, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790191, Length=323, Percent_Identity=25.3869969040248, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787794, Length=329, Percent_Identity=27.0516717325228, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693152, Length=310, Percent_Identity=22.9032258064516, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787793, Length=215, Percent_Identity=29.3023255813954, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788471, Length=174, Percent_Identity=30.4597701149425, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082395, Length=270, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI145693214, Length=236, Percent_Identity=27.9661016949153, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37044; Mature: 36913

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTNIKSTALEHPVSIARDGFAAWFSQMLTRYGLLWLCFLLVIIFSLTTDSFASMLTLN
CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
AILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILAITLQVQFGFSWQMATVTVLI
HHHHCCCCEEEEEHHHHHEEEEEEEEECCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHH
VAAIYGLLNGILVALADIDSFVATLGSGTVLYAIALWHSGGRQIVGDLPDGFIAINSTEI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEHHCCCCCEECCCCCCEEEEECCEE
FGIPISAFYVLIIAIVMWLVTEHTPTGRCMYAVGGNPTAAHLNGISIKKYTIVPFIVSSL
EECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCEEEHHHHHHHHHHHH
ITGFTGVLIAAQQGVGQASVGMDYLLPALVGAFLGSTTIKPGRINVWGTVVGIAILAIGI
HHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHH
SGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRKRLLNQKAVHKRATK
HHHHHHCCCEEEHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQTNIKSTALEHPVSIARDGFAAWFSQMLTRYGLLWLCFLLVIIFSLTTDSFASMLTLN
CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
AILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILAITLQVQFGFSWQMATVTVLI
HHHHCCCCEEEEEHHHHHEEEEEEEEECCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHH
VAAIYGLLNGILVALADIDSFVATLGSGTVLYAIALWHSGGRQIVGDLPDGFIAINSTEI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEHHCCCCCEECCCCCCEEEEECCEE
FGIPISAFYVLIIAIVMWLVTEHTPTGRCMYAVGGNPTAAHLNGISIKKYTIVPFIVSSL
EECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCEEEHHHHHHHHHHHH
ITGFTGVLIAAQQGVGQASVGMDYLLPALVGAFLGSTTIKPGRINVWGTVVGIAILAIGI
HHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHH
SGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRKRLLNQKAVHKRATK
HHHHHHCCCEEEHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]