Click here to switch to the map view.

The map label for this gene is sgbU [H]

Identifier: 15603110

GI number: 15603110

Start: 1438280

End: 1439140

Strand: Reverse

Name: sgbU [H]

Synonym: PM1245

Alternate gene names: 15603110

Gene position: 1439140-1438280 (Counterclockwise)

Preceding gene: 15603111

Following gene: 161723310

Centisome position: 63.75

GC content: 41.35

Gene sequence:

>861_bases
GTGAGAAAACATAAAATAGGGATTTATGAAAAAGCCCTCCCTAAAAATATAAGCTGGCAAGATCGTCTCTCCATTGCCAA
AGCCTGTGGCTTTGACTTTGTTGAAATTTCCATTGATGAAACTGATGAACGACTTGCACGCTTAGATTGGACAAAAAAAG
AGCGCATTAAATTAGCAAAAGCCATTATTTCAACAGGCATCACGATTCCTTCCATGTGCTTATCGGCTCATCGTCGCTTC
CCATTTGGTAGCCGAGATGAAACCACGCGCCAAAAAGCTTATGAAGTGATGGAAAAAGCCATCCAACTTGCTGTTGATTT
AGGTATTCGTACTATTCAAATCGCAGGTTACGATGTGTACTATGAAGAACAAGATGAAGGAACGATTGCTCGTTTTCAAC
AAGGGATGGAATGGGCGGTGGCACTTGCCGCTAGCAATCAAGTCACCCTTGCAGTCGAAATTATGGACACAAAATTCATG
AGTTCGATTAGCCGTTGGAAAAAATGGGATGAGTTAATTCGCTCCCCGTGGTTTACCGTTTACCCTGATTTAGGCAATCT
GTCGGCGTGGAATGATAATGTTGCAGAAGAACTGAAATTAGGTATCGACAAAATTTCGGCGATCCATTTAAAAGACACCT
ATAAAGTAACAGAAACCTGTCAAGGGCAATTCCGTGATGTACCATTTGGTGAAGGCTGTGTTGATTTTGCGCAATGTTTT
AAAACACTAGCCGCGTTAAATTACCGTGGTGCTTTTTTAATTGAAATGTGGACGGAAAAAGCGGAAGAACCCATTGCTGA
AATTATCAACGCACGTCGTTGGATCGAACAAAAAATGAAAGAAGGTGGTTTCCAATGTTAG

Upstream 100 bases:

>100_bases
TGGCAGAGCCTTTACGGGTGAAGCGGGCAAATTAACTGCAGAAAAAGTGCGGTCAGAAATTAATAAATATTGGTGATAAT
ACAGAAATACGGAGCAAATA

Downstream 100 bases:

>100_bases
AAGAATTGAAACAAAAAGTGTTTGAAGCCAATTTGGCATTACCCAAATACAAGTTAGTGACCTTTACTTGGGGTAACGTG
AGTGGCATCGACAGAGAAAA

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: HUMPI [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRKHKIGIYEKALPKNISWQDRLSIAKACGFDFVEISIDETDERLARLDWTKKERIKLAKAIISTGITIPSMCLSAHRRF
PFGSRDETTRQKAYEVMEKAIQLAVDLGIRTIQIAGYDVYYEEQDEGTIARFQQGMEWAVALAASNQVTLAVEIMDTKFM
SSISRWKKWDELIRSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTETCQGQFRDVPFGEGCVDFAQCF
KTLAALNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC

Sequences:

>Translated_286_residues
MRKHKIGIYEKALPKNISWQDRLSIAKACGFDFVEISIDETDERLARLDWTKKERIKLAKAIISTGITIPSMCLSAHRRF
PFGSRDETTRQKAYEVMEKAIQLAVDLGIRTIQIAGYDVYYEEQDEGTIARFQQGMEWAVALAASNQVTLAVEIMDTKFM
SSISRWKKWDELIRSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTETCQGQFRDVPFGEGCVDFAQCF
KTLAALNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC
>Mature_286_residues
MRKHKIGIYEKALPKNISWQDRLSIAKACGFDFVEISIDETDERLARLDWTKKERIKLAKAIISTGITIPSMCLSAHRRF
PFGSRDETTRQKAYEVMEKAIQLAVDLGIRTIQIAGYDVYYEEQDEGTIARFQQGMEWAVALAASNQVTLAVEIMDTKFM
SSISRWKKWDELIRSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTETCQGQFRDVPFGEGCVDFAQCF
KTLAALNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC

Specific function: Isomerization of D-arabino-6-hexulose 3-phosphate to D- fructose 6-phosphate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=70.6293706293706, Blast_Score=442, Evalue=1e-125,
Organism=Escherichia coli, GI1790641, Length=279, Percent_Identity=53.0465949820789, Blast_Score=324, Evalue=3e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.-.-.-

Molecular weight: Translated: 32860; Mature: 32860

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKHKIGIYEKALPKNISWQDRLSIAKACGFDFVEISIDETDERLARLDWTKKERIKLAK
CCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHH
AIISTGITIPSMCLSAHRRFPFGSRDETTRQKAYEVMEKAIQLAVDLGIRTIQIAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEEQDEGTIARFQQGMEWAVALAASNQVTLAVEIMDTKFMSSISRWKKWDELIRSPWFTV
EECCCCCHHHHHHHCHHHEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
YPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTETCQGQFRDVPFGEGCVDFAQCF
CCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
KTLAALNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRKHKIGIYEKALPKNISWQDRLSIAKACGFDFVEISIDETDERLARLDWTKKERIKLAK
CCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHH
AIISTGITIPSMCLSAHRRFPFGSRDETTRQKAYEVMEKAIQLAVDLGIRTIQIAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEEQDEGTIARFQQGMEWAVALAASNQVTLAVEIMDTKFMSSISRWKKWDELIRSPWFTV
EECCCCCHHHHHHHCHHHEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
YPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTETCQGQFRDVPFGEGCVDFAQCF
CCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
KTLAALNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]