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The map label for this gene is radC [C]

Identifier: 15603017

GI number: 15603017

Start: 1349853

End: 1350527

Strand: Reverse

Name: radC [C]

Synonym: PM1152

Alternate gene names: 15603017

Gene position: 1350527-1349853 (Counterclockwise)

Preceding gene: 15603024

Following gene: 15603016

Centisome position: 59.82

GC content: 37.04

Gene sequence:

>675_bases
ATGCAGAATCAAGTAGAAAGCCTGAGTTTGATGCCACGTGAAAAATTATTGCGTTTTGGTGCACCGGCTTTAACTGATGA
AGAATTGCTAGCGATTTTTTTAAGAACAGGGATAAAAGGCTGCTCCGTTATGCAACTTTCGCGACACGTTTTACAGCATT
TCCACTCATTAAGGGGATTAATGTCAGCCACACAAACTGAGTTTTGTCAGCTGAAAGGATTAGGAATAACGCAATTTATT
CAATTACAAGCCTGTACTGAAATGAGTAAACGCTATCTACAAGAAGAATTAAAATTAACACAAGCATTTAAGAATTCTGA
AAATGTGCGATTTTATTTACAAGCGACATTGGAAAATAAGGAACGAGAAATTTTTCAGGTCCTTTTTTTAGATAATCAGC
ATCGCTTGATTAAACAAGAAGAAATGTTTTTAGGGACGATTAATTGTACAACGATTCACCCGAGAGAAATTATAAAAAGT
GCACTTTTTTGTAATGCGGCGGCGTTAATTTTAGCTCACAATCACCCTTCTGGAAACCCCGAACCAAGTGCCTCGGATAA
AATGGTTACCACAAAAATCCAAGCGGCTGCTGAGTTAGTTGAAATCCGAATTTTGGATCATTTTGTGATAGGGAAAGGCT
GTTACTATTCGTTTGCAGAAAATAGACTCCTATAA

Upstream 100 bases:

>100_bases
TATTTTTGCGATCTTATTTCCAGAGTCGTGTGTGATCGTTTTCCTTGATAAGCGATATCAGTAATTTAATGCGTTATGTG
ATAACTAAGAGGATGATATC

Downstream 100 bases:

>100_bases
GGTTTTTTGTTACCATTCAATTCCTTGGCGAAAATTTTTACATTTATTTGTTGAAATGTGGTATTTAGGCTTGAGAATAA
AAGATAAAGTGAGTATAATT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MQNQVESLSLMPREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGLMSATQTEFCQLKGLGITQFI
QLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENKEREIFQVLFLDNQHRLIKQEEMFLGTINCTTIHPREIIKS
ALFCNAAALILAHNHPSGNPEPSASDKMVTTKIQAAAELVEIRILDHFVIGKGCYYSFAENRLL

Sequences:

>Translated_224_residues
MQNQVESLSLMPREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGLMSATQTEFCQLKGLGITQFI
QLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENKEREIFQVLFLDNQHRLIKQEEMFLGTINCTTIHPREIIKS
ALFCNAAALILAHNHPSGNPEPSASDKMVTTKIQAAAELVEIRILDHFVIGKGCYYSFAENRLL
>Mature_224_residues
MQNQVESLSLMPREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGLMSATQTEFCQLKGLGITQFI
QLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENKEREIFQVLFLDNQHRLIKQEEMFLGTINCTTIHPREIIKS
ALFCNAAALILAHNHPSGNPEPSASDKMVTTKIQAAAELVEIRILDHFVIGKGCYYSFAENRLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=211, Percent_Identity=48.3412322274881, Blast_Score=221, Evalue=2e-59,
Organism=Escherichia coli, GI2367100, Length=123, Percent_Identity=51.219512195122, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1788997, Length=123, Percent_Identity=47.1544715447154, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=44.7552447552448, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1152_PASMU (P57913)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246089.1
- ProteinModelPortal:   P57913
- SMR:   P57913
- GeneID:   1244499
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1152
- NMPDR:   fig|272843.1.peg.1152
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   PMUL272843:PM1152-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25542; Mature: 25542

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNQVESLSLMPREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGL
CCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
MSATQTEFCQLKGLGITQFIQLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCH
EREIFQVLFLDNQHRLIKQEEMFLGTINCTTIHPREIIKSALFCNAAALILAHNHPSGNP
HHHHHHHHHCCCCHHHHHHHHHEEEEEEECEECHHHHHHHHHHHHHEEEEEEECCCCCCC
EPSASDKMVTTKIQAAAELVEIRILDHFVIGKGCYYSFAENRLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MQNQVESLSLMPREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGL
CCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
MSATQTEFCQLKGLGITQFIQLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCH
EREIFQVLFLDNQHRLIKQEEMFLGTINCTTIHPREIIKSALFCNAAALILAHNHPSGNP
HHHHHHHHHCCCCHHHHHHHHHEEEEEEECEECHHHHHHHHHHHHHEEEEEEECCCCCCC
EPSASDKMVTTKIQAAAELVEIRILDHFVIGKGCYYSFAENRLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100