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The map label for this gene is ubiF [H]

Identifier: 15602867

GI number: 15602867

Start: 1181312

End: 1182487

Strand: Direct

Name: ubiF [H]

Synonym: PM1002

Alternate gene names: 15602867

Gene position: 1181312-1182487 (Clockwise)

Preceding gene: 15602858

Following gene: 15602868

Centisome position: 52.33

GC content: 42.01

Gene sequence:

>1176_bases
ATGGACGTCATACAAAAAGACATGATCGTGGTTGGCGGTGGCATGGTTGGTGCAGCCTGTGCGCTTGGCTTAGGTAAACA
AGGACATCAAGTCCAGCTTATCGAACACGCCCCACTCCCACAGTTTCAACCTAATTCGCCTTACGATCTTCGCATTTCTG
CGATCAGTGTTGCTTCCGTTAATCTCTTAAAACAATTAGGTGCTTGGCAGTATATCGAAAATACTCGTATTTGCCCGTAT
CGCGCCTTAGAAACCTGGGAGATCGAAGGATTTGGGACCACTTTCCATAGTCAAGAATTAAACTTACCTGAGCTGGGTTT
TATGATAGAAAATAATGTTGTACAACTTGGTTTGTGGCAGGCAATTTCAAGCATTGAAAACATCCAAACTTGCGTAGGAT
GTACTATCCAAAAAGTCGAAAAGTGCGGTGAAAATTGGCAAATTTTGTTAGCTAATGGTACAACTTACCAAGCCCCTCTT
ATCATTGCCGCTGATGGGGCAAATTCACAGTTACGCCAAATTGCTAATATTGGGACGAGTGGTTGGCAATATCGTCAAAG
CTGTTTGCTTATTACCGTCGATACTGAACTTGAACAACAAGATGTCACCTGGCAACAATTTTTCCCTTCTGGACCAAGAG
CCTTTCTACCATTATTAGGCAAACAAGCCTGCTTAGTTTGGTATGATTCCCCACAACGTATCCAAACCCTCAAACAACTT
TCTCGCGAAAAATTAGCGGCGCAAATTGAGCAAGCTTTCCCGGCACGATTAGGAAAAATCAAAGTCCAAGCAGCAAATAG
CTTTGAGCTGACTCGAACCCATGCGCAAGATTACTTTAAACAAGGTATTGTGCTAGTAGGTGATGCTGCACACACCATTA
ATCCTCTTGCTGGACAAGGTGTGAATCTAGGTTTTAAAGATGTCAACATTCTGCTTGAAGTACTACAGCAGGCGAGTCAG
AAAAAAGAGCCTCTCGCCAGTGATGATGTACTTATACGTTATCAGCGTAAACGTAAACCCGATAACCTATTAATGCAAAC
AGGTATGGATGTATTTTATAAAACGTTTAAAGAAGATATCTTACCGCTCAAAATAGTACGTAATGCCTCATTATTCCTCG
CCAACAAAGCAACGCCATTGAAAAAGCAGGCATTGAAATATGCATTGGGTTTATAA

Upstream 100 bases:

>100_bases
TTTACAGTCTTGAACCTATGCTGGCTAGCTAAAAAAGAGATTTCTTTTGAAATTCCCTCATTGACGGTAGAATACGTAAC
AAAAAGAAAAGGAAAATCCT

Downstream 100 bases:

>100_bases
CACTTATTTCTCATGGCATGAGACTTAACTTGACGAGCTAACCGTTCAATAGACAATAAACCAATACAAAATCCCTTTAG
ATTTATGCGTCGTAATACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MDVIQKDMIVVGGGMVGAACALGLGKQGHQVQLIEHAPLPQFQPNSPYDLRISAISVASVNLLKQLGAWQYIENTRICPY
RALETWEIEGFGTTFHSQELNLPELGFMIENNVVQLGLWQAISSIENIQTCVGCTIQKVEKCGENWQILLANGTTYQAPL
IIAADGANSQLRQIANIGTSGWQYRQSCLLITVDTELEQQDVTWQQFFPSGPRAFLPLLGKQACLVWYDSPQRIQTLKQL
SREKLAAQIEQAFPARLGKIKVQAANSFELTRTHAQDYFKQGIVLVGDAAHTINPLAGQGVNLGFKDVNILLEVLQQASQ
KKEPLASDDVLIRYQRKRKPDNLLMQTGMDVFYKTFKEDILPLKIVRNASLFLANKATPLKKQALKYALGL

Sequences:

>Translated_391_residues
MDVIQKDMIVVGGGMVGAACALGLGKQGHQVQLIEHAPLPQFQPNSPYDLRISAISVASVNLLKQLGAWQYIENTRICPY
RALETWEIEGFGTTFHSQELNLPELGFMIENNVVQLGLWQAISSIENIQTCVGCTIQKVEKCGENWQILLANGTTYQAPL
IIAADGANSQLRQIANIGTSGWQYRQSCLLITVDTELEQQDVTWQQFFPSGPRAFLPLLGKQACLVWYDSPQRIQTLKQL
SREKLAAQIEQAFPARLGKIKVQAANSFELTRTHAQDYFKQGIVLVGDAAHTINPLAGQGVNLGFKDVNILLEVLQQASQ
KKEPLASDDVLIRYQRKRKPDNLLMQTGMDVFYKTFKEDILPLKIVRNASLFLANKATPLKKQALKYALGL
>Mature_391_residues
MDVIQKDMIVVGGGMVGAACALGLGKQGHQVQLIEHAPLPQFQPNSPYDLRISAISVASVNLLKQLGAWQYIENTRICPY
RALETWEIEGFGTTFHSQELNLPELGFMIENNVVQLGLWQAISSIENIQTCVGCTIQKVEKCGENWQILLANGTTYQAPL
IIAADGANSQLRQIANIGTSGWQYRQSCLLITVDTELEQQDVTWQQFFPSGPRAFLPLLGKQACLVWYDSPQRIQTLKQL
SREKLAAQIEQAFPARLGKIKVQAANSFELTRTHAQDYFKQGIVLVGDAAHTINPLAGQGVNLGFKDVNILLEVLQQASQ
KKEPLASDDVLIRYQRKRKPDNLLMQTGMDVFYKTFKEDILPLKIVRNASLFLANKATPLKKQALKYALGL

Specific function: Oxygenase that introduces the hydroxyl group at carbon five of 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=417, Percent_Identity=29.0167865707434, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI32967307, Length=332, Percent_Identity=28.9156626506024, Blast_Score=158, Evalue=1e-38,
Organism=Escherichia coli, GI1786883, Length=385, Percent_Identity=50.9090909090909, Blast_Score=388, Evalue=1e-109,
Organism=Escherichia coli, GI1789273, Length=389, Percent_Identity=38.0462724935733, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI1789274, Length=395, Percent_Identity=29.620253164557, Blast_Score=162, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI25146631, Length=438, Percent_Identity=28.9954337899543, Blast_Score=177, Evalue=8e-45,
Organism=Saccharomyces cerevisiae, GI6321694, Length=450, Percent_Identity=25.5555555555556, Blast_Score=129, Evalue=1e-30,
Organism=Drosophila melanogaster, GI19920760, Length=419, Percent_Identity=28.6396181384248, Blast_Score=174, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.14.13.-

Molecular weight: Translated: 43521; Mature: 43521

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVIQKDMIVVGGGMVGAACALGLGKQGHQVQLIEHAPLPQFQPNSPYDLRISAISVASV
CCCCCCCEEEECCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEHHHH
NLLKQLGAWQYIENTRICPYRALETWEIEGFGTTFHSQELNLPELGFMIENNVVQLGLWQ
HHHHHHCCHHHHCCCCCCCEECCEEEEECCCCCEECCCCCCCCHHCEEEECCEEEEHHHH
AISSIENIQTCVGCTIQKVEKCGENWQILLANGTTYQAPLIIAADGANSQLRQIANIGTS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCEEEEECCCCHHHHHHHHCCCC
GWQYRQSCLLITVDTELEQQDVTWQQFFPSGPRAFLPLLGKQACLVWYDSPQRIQTLKQL
CCEEECEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHH
SREKLAAQIEQAFPARLGKIKVQAANSFELTRTHAQDYFKQGIVLVGDAAHTINPLAGQG
HHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
VNLGFKDVNILLEVLQQASQKKEPLASDDVLIRYQRKRKPDNLLMQTGMDVFYKTFKEDI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCC
LPLKIVRNASLFLANKATPLKKQALKYALGL
CEEEEECCCEEEEECCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MDVIQKDMIVVGGGMVGAACALGLGKQGHQVQLIEHAPLPQFQPNSPYDLRISAISVASV
CCCCCCCEEEECCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEHHHH
NLLKQLGAWQYIENTRICPYRALETWEIEGFGTTFHSQELNLPELGFMIENNVVQLGLWQ
HHHHHHCCHHHHCCCCCCCEECCEEEEECCCCCEECCCCCCCCHHCEEEECCEEEEHHHH
AISSIENIQTCVGCTIQKVEKCGENWQILLANGTTYQAPLIIAADGANSQLRQIANIGTS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCEEEEECCCCHHHHHHHHCCCC
GWQYRQSCLLITVDTELEQQDVTWQQFFPSGPRAFLPLLGKQACLVWYDSPQRIQTLKQL
CCEEECEEEEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHH
SREKLAAQIEQAFPARLGKIKVQAANSFELTRTHAQDYFKQGIVLVGDAAHTINPLAGQG
HHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
VNLGFKDVNILLEVLQQASQKKEPLASDDVLIRYQRKRKPDNLLMQTGMDVFYKTFKEDI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCC
LPLKIVRNASLFLANKATPLKKQALKYALGL
CEEEEECCCEEEEECCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydroxylation [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 10802164 [H]