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The map label for this gene is fdhD

Identifier: 15602275

GI number: 15602275

Start: 479567

End: 480388

Strand: Direct

Name: fdhD

Synonym: PM0410

Alternate gene names: 15602275

Gene position: 479567-480388 (Clockwise)

Preceding gene: 15602269

Following gene: 15602276

Centisome position: 21.24

GC content: 41.85

Gene sequence:

>822_bases
TTGAACTGGATCACAAAATTTACAGTTGATTTTTTTTGCAAATTAACAAAAAAGCAACAAATAAAAAACAAAACAACAAC
TTATGAAGCAAAACAAGAAAATCTTGCAACAGAGGTTCCTGTTGCCCTTGTTTATAATGGGATTTCTCATACGGTGATGA
TGTGTTCACCGGAAAATTTAGCGGATTTTGCCATGGGATTTTCGTTGGCAGAAGGCATTATTGATAAGCCAAGTGATATT
TATGGTATTGATGTGGTTCCTGCCTGCCAGGGGATTGAAGTTCAAATTGAACTTGCCACCCGTTGTTTTGTACGCCTCAA
AGCACAACGACGTACATTAGCGGGGCGGACTGGTTGCGGTATTTGTGGTACTGAGCAATTACAGCAGGTGCACAAAAATT
TACCTCCGTTAGAACGCACTATCCAGTTTGATTTAAACCGCCTAGATGCTTGCTTAATTCAACTGCAACAAGCACAAGTA
TTAGGGCAACAAACCGGTTCAACGCATGCAGCGGGTTTTTTTGATCTCGCAGGAAATTTGCTGTGCCTACGTGAAGATGT
CGGGCGTCATGTGGCATTAGATAAATTATTAGGTTGGCATGCGAAACAGCCAGCAGCAAAAGGGTTTGTATTGGTGACCA
GTCGAGCTAGTTATGAAATGGTGCAAAAAACAGCAGCCTGTGGCATTGAAATGCTAATTGCCATTTCTGCAGCGACTGAA
CTCGCAGTGAACATGGCAGAACAATACCAATTAACCTTAGTTGGCTTTGCGCGAGAAGGCAGAGCAACAATCTATACAGG
AAAAGAGCGGTTGTTTTTTTGA

Upstream 100 bases:

>100_bases
CGTCTTACGAAGTAAATTACCAGCAATTAAAACACCTTTTAGGATACCGATTTTTTAGTGGTAAATCTATAACCAATTAC
CATTAATAAGGAAAAATATT

Downstream 100 bases:

>100_bases
GAATTTTCTCTATAATCCTACTGTATAAAAAAACAGTTTGGTGGGTCTAAATCGCGTAAGCAAGGTAGGCATAGTCTGCC
TTGTTGCTTTTATGGCGACT

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNWITKFTVDFFCKLTKKQQIKNKTTTYEAKQENLATEVPVALVYNGISHTVMMCSPENLADFAMGFSLAEGIIDKPSDI
YGIDVVPACQGIEVQIELATRCFVRLKAQRRTLAGRTGCGICGTEQLQQVHKNLPPLERTIQFDLNRLDACLIQLQQAQV
LGQQTGSTHAAGFFDLAGNLLCLREDVGRHVALDKLLGWHAKQPAAKGFVLVTSRASYEMVQKTAACGIEMLIAISAATE
LAVNMAEQYQLTLVGFAREGRATIYTGKERLFF

Sequences:

>Translated_273_residues
MNWITKFTVDFFCKLTKKQQIKNKTTTYEAKQENLATEVPVALVYNGISHTVMMCSPENLADFAMGFSLAEGIIDKPSDI
YGIDVVPACQGIEVQIELATRCFVRLKAQRRTLAGRTGCGICGTEQLQQVHKNLPPLERTIQFDLNRLDACLIQLQQAQV
LGQQTGSTHAAGFFDLAGNLLCLREDVGRHVALDKLLGWHAKQPAAKGFVLVTSRASYEMVQKTAACGIEMLIAISAATE
LAVNMAEQYQLTLVGFAREGRATIYTGKERLFF
>Mature_273_residues
MNWITKFTVDFFCKLTKKQQIKNKTTTYEAKQENLATEVPVALVYNGISHTVMMCSPENLADFAMGFSLAEGIIDKPSDI
YGIDVVPACQGIEVQIELATRCFVRLKAQRRTLAGRTGCGICGTEQLQQVHKNLPPLERTIQFDLNRLDACLIQLQQAQV
LGQQTGSTHAAGFFDLAGNLLCLREDVGRHVALDKLLGWHAKQPAAKGFVLVTSRASYEMVQKTAACGIEMLIAISAATE
LAVNMAEQYQLTLVGFAREGRATIYTGKERLFF

Specific function: Necessary for formate dehydrogenase activity

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family

Homologues:

Organism=Escherichia coli, GI1790329, Length=274, Percent_Identity=55.1094890510949, Blast_Score=291, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHD_PASMU (P57842)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245347.1
- ProteinModelPortal:   P57842
- SMR:   P57842
- GeneID:   1243757
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0410
- NMPDR:   fig|272843.1.peg.410
- HOGENOM:   HBG732883
- OMA:   GRAHTAN
- ProtClustDB:   PRK00724
- BioCyc:   PMUL272843:PM0410-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00187
- InterPro:   IPR003786
- TIGRFAMs:   TIGR00129

Pfam domain/function: PF02634 FdhD-NarQ

EC number: NA

Molecular weight: Translated: 30153; Mature: 30153

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWITKFTVDFFCKLTKKQQIKNKTTTYEAKQENLATEVPVALVYNGISHTVMMCSPENL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCHHHEECCCCCEEEEECCCCH
ADFAMGFSLAEGIIDKPSDIYGIDVVPACQGIEVQIELATRCFVRLKAQRRTLAGRTGCG
HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC
ICGTEQLQQVHKNLPPLERTIQFDLNRLDACLIQLQQAQVLGQQTGSTHAAGFFDLAGNL
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCE
LCLREDVGRHVALDKLLGWHAKQPAAKGFVLVTSRASYEMVQKTAACGIEMLIAISAATE
EEEHHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHH
LAVNMAEQYQLTLVGFAREGRATIYTGKERLFF
HHHHHHHHEEEEEEEEECCCCEEEEECCCCCCC
>Mature Secondary Structure
MNWITKFTVDFFCKLTKKQQIKNKTTTYEAKQENLATEVPVALVYNGISHTVMMCSPENL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCHHHEECCCCCEEEEECCCCH
ADFAMGFSLAEGIIDKPSDIYGIDVVPACQGIEVQIELATRCFVRLKAQRRTLAGRTGCG
HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC
ICGTEQLQQVHKNLPPLERTIQFDLNRLDACLIQLQQAQVLGQQTGSTHAAGFFDLAGNL
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCE
LCLREDVGRHVALDKLLGWHAKQPAAKGFVLVTSRASYEMVQKTAACGIEMLIAISAATE
EEEHHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHH
LAVNMAEQYQLTLVGFAREGRATIYTGKERLFF
HHHHHHHHEEEEEEEEECCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100