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The map label for this gene is ycbB [C]

Identifier: 15602135

GI number: 15602135

Start: 306400

End: 307947

Strand: Direct

Name: ycbB [C]

Synonym: PM0270

Alternate gene names: 15602135

Gene position: 306400-307947 (Clockwise)

Preceding gene: 15602134

Following gene: 15602136

Centisome position: 13.57

GC content: 37.47

Gene sequence:

>1548_bases
ATGAGAGTGGCGGTCATTTTCTCATTTATGTTAAGGAACTATGTGATGTTAAAGATAAAATCATTTAAATTTGCACAATT
AGCCTTGCTGTTTTCTTGTGCTTGTTCAACGAGCGTATTCGCTAATCAAGAGTCGTTGCCTACTCCAATTATTGATACAG
TACAAGAAGCCGATCTTTTAACACGTCAACAGCTTGAGTTAGAAACTAAAGCCATTGAAGCGCAATTAGCAGCAGAAAAG
AAACTAGAAGAGGAACGTCTTGCAGCAGAAAAACAAGCGCTCGCAGAACAAACATTAACGGATAAGTTAGGGCAAATTGA
ATTACAATTTAAGTCAACTGTTGCGAAAATTTATGCAGATAATGATTTCCAATTACTTTGGCAAGATAAGGCAACGGAAC
AACAATTCTTACGTGAGTATGCTGCGTTAGTTCTCAGTGGGATTTCTAAACAAGCTTCCACGATTCTTGAACATATTGAC
TCGACGTCAGAAGGTAGCTTTGAACGTGATGCATTACTCACCGATACCTTTTTAGATTACATGTATTATGCCAACAATGT
GAGTAAATCCGCACAAAAATGGTTATATAGCGCGAATAACTATAAACCAGCATTACCTCGTGATGAACAGATTCATGCAT
GGTTATCTGCTGTTGCAATGGGGAAAAGTGCGGACTTTTTAACGTCACTTTCAACACAAAATCCATTATATCGTCAGACG
ATAGCGCAGCTACCTTCTTTATTTAATGCAGAAGGGATGGATAATGATAAGCTGGCACAATTATATAAAATTGCAATTAA
TGCCCAACGTTTACGTGTTATTCCTACTTTCGACAATGGCTTATTTGTCAATATTCCAAGCTACCAATTGCATTATTATC
GTGATGGTAAACTGATTTTGACCTCTAAAGTAATTGTCGGCAAAAAAGCGCGTAAAACCCCTGTACTTTACAGTAAATTA
AGTGATGTTGTCGTGAATCCACCTTGGAACACCCCGACACGTTTGATTAATGAAGATATCATTCCACGTGTACGTAAAGA
TCCAAGTTATATCTATCGTAATGGTTATACGATTATTGACAGTAAAGGAAAAACTATCGATCCTTATACGATTGATTGGG
AAAATATGACGGCGAAAAAATTTCCTTACCGTTTACGTCAGGCACCGGGAGACAGTGCATTAGGTAACTTTAAGTTTAAT
ATGCCAAGTTCGGATGCCATCTATTTGCACGATACACCAAGCAGAGGCTTGTTTGCGAAGAAAGATTTAGCATTAAGCTC
AGGCTGTGTCCGAGTAGAAAAAGCAGATGAATTAGCTAGTGTGCTTTTAAAAGAGGCGGGCTGGAGTGAAGAACGTAAAG
TGAATACTGTAAAAAGTCGTAAAACGATCTCAGTTAATGTGGCTTCGAATAATCCGGTCTTTCTATATTATGTGACCGCA
TGGGTCAACAATGGTAAAACACATACTTTACCTGATATTTATGGTTATGATGTCACCCCAAATTTAAGCTACATTAATTG
GGCTATCGTTAAAAAGTATTTAAATTAA

Upstream 100 bases:

>100_bases
AGCAGAGAGAATGGCAGCTGATCTTGTTCAGTTTGAAACCGAAAAAATGGGTATGAATCAGAAAAGCACAAACTAGTTTT
ATTTTGACCGCACTTTCATC

Downstream 100 bases:

>100_bases
TCAGACTCTCGTCACAAATTGAACACATTCCCCCTTTCTTTTTAGGGGGAAATAGGTAAAATAAGTGCGTTTTGTTCTTT
TTGAGAACGAATGTTAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MRVAVIFSFMLRNYVMLKIKSFKFAQLALLFSCACSTSVFANQESLPTPIIDTVQEADLLTRQQLELETKAIEAQLAAEK
KLEEERLAAEKQALAEQTLTDKLGQIELQFKSTVAKIYADNDFQLLWQDKATEQQFLREYAALVLSGISKQASTILEHID
STSEGSFERDALLTDTFLDYMYYANNVSKSAQKWLYSANNYKPALPRDEQIHAWLSAVAMGKSADFLTSLSTQNPLYRQT
IAQLPSLFNAEGMDNDKLAQLYKIAINAQRLRVIPTFDNGLFVNIPSYQLHYYRDGKLILTSKVIVGKKARKTPVLYSKL
SDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIIDSKGKTIDPYTIDWENMTAKKFPYRLRQAPGDSALGNFKFN
MPSSDAIYLHDTPSRGLFAKKDLALSSGCVRVEKADELASVLLKEAGWSEERKVNTVKSRKTISVNVASNNPVFLYYVTA
WVNNGKTHTLPDIYGYDVTPNLSYINWAIVKKYLN

Sequences:

>Translated_515_residues
MRVAVIFSFMLRNYVMLKIKSFKFAQLALLFSCACSTSVFANQESLPTPIIDTVQEADLLTRQQLELETKAIEAQLAAEK
KLEEERLAAEKQALAEQTLTDKLGQIELQFKSTVAKIYADNDFQLLWQDKATEQQFLREYAALVLSGISKQASTILEHID
STSEGSFERDALLTDTFLDYMYYANNVSKSAQKWLYSANNYKPALPRDEQIHAWLSAVAMGKSADFLTSLSTQNPLYRQT
IAQLPSLFNAEGMDNDKLAQLYKIAINAQRLRVIPTFDNGLFVNIPSYQLHYYRDGKLILTSKVIVGKKARKTPVLYSKL
SDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIIDSKGKTIDPYTIDWENMTAKKFPYRLRQAPGDSALGNFKFN
MPSSDAIYLHDTPSRGLFAKKDLALSSGCVRVEKADELASVLLKEAGWSEERKVNTVKSRKTISVNVASNNPVFLYYVTA
WVNNGKTHTLPDIYGYDVTPNLSYINWAIVKKYLN
>Mature_515_residues
MRVAVIFSFMLRNYVMLKIKSFKFAQLALLFSCACSTSVFANQESLPTPIIDTVQEADLLTRQQLELETKAIEAQLAAEK
KLEEERLAAEKQALAEQTLTDKLGQIELQFKSTVAKIYADNDFQLLWQDKATEQQFLREYAALVLSGISKQASTILEHID
STSEGSFERDALLTDTFLDYMYYANNVSKSAQKWLYSANNYKPALPRDEQIHAWLSAVAMGKSADFLTSLSTQNPLYRQT
IAQLPSLFNAEGMDNDKLAQLYKIAINAQRLRVIPTFDNGLFVNIPSYQLHYYRDGKLILTSKVIVGKKARKTPVLYSKL
SDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIIDSKGKTIDPYTIDWENMTAKKFPYRLRQAPGDSALGNFKFN
MPSSDAIYLHDTPSRGLFAKKDLALSSGCVRVEKADELASVLLKEAGWSEERKVNTVKSRKTISVNVASNNPVFLYYVTA
WVNNGKTHTLPDIYGYDVTPNLSYINWAIVKKYLN

Specific function: Unknown

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=240, Percent_Identity=50.4166666666667, Blast_Score=253, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 58391; Mature: 58391

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAVIFSFMLRNYVMLKIKSFKFAQLALLFSCACSTSVFANQESLPTPIIDTVQEADLL
CCHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHH
TRQQLELETKAIEAQLAAEKKLEEERLAAEKQALAEQTLTDKLGQIELQFKSTVAKIYAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHEEEEEEC
NDFQLLWQDKATEQQFLREYAALVLSGISKQASTILEHIDSTSEGSFERDALLTDTFLDY
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
MYYANNVSKSAQKWLYSANNYKPALPRDEQIHAWLSAVAMGKSADFLTSLSTQNPLYRQT
HHHHHCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHH
IAQLPSLFNAEGMDNDKLAQLYKIAINAQRLRVIPTFDNGLFVNIPSYQLHYYRDGKLIL
HHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCEEEEEEECCEEEE
TSKVIVGKKARKTPVLYSKLSDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIID
EEEEEECCCCCCCCHHHHHHCCEEECCCCCCHHHHHCHHHCCCCCCCCCEEEECCEEEEE
SKGKTIDPYTIDWENMTAKKFPYRLRQAPGDSALGNFKFNMPSSDAIYLHDTPSRGLFAK
CCCCCCCCEEECCCCCCHHHCCHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCCCEEC
KDLALSSGCVRVEKADELASVLLKEAGWSEERKVNTVKSRKTISVNVASNNPVFLYYVTA
CCHHHCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEECCCCEEEEEEEE
WVNNGKTHTLPDIYGYDVTPNLSYINWAIVKKYLN
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRVAVIFSFMLRNYVMLKIKSFKFAQLALLFSCACSTSVFANQESLPTPIIDTVQEADLL
CCHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHH
TRQQLELETKAIEAQLAAEKKLEEERLAAEKQALAEQTLTDKLGQIELQFKSTVAKIYAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHEEEEEEC
NDFQLLWQDKATEQQFLREYAALVLSGISKQASTILEHIDSTSEGSFERDALLTDTFLDY
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
MYYANNVSKSAQKWLYSANNYKPALPRDEQIHAWLSAVAMGKSADFLTSLSTQNPLYRQT
HHHHHCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHH
IAQLPSLFNAEGMDNDKLAQLYKIAINAQRLRVIPTFDNGLFVNIPSYQLHYYRDGKLIL
HHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCEEEEEEECCEEEE
TSKVIVGKKARKTPVLYSKLSDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIID
EEEEEECCCCCCCCHHHHHHCCEEECCCCCCHHHHHCHHHCCCCCCCCCEEEECCEEEEE
SKGKTIDPYTIDWENMTAKKFPYRLRQAPGDSALGNFKFNMPSSDAIYLHDTPSRGLFAK
CCCCCCCCEEECCCCCCHHHCCHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCCCEEC
KDLALSSGCVRVEKADELASVLLKEAGWSEERKVNTVKSRKTISVNVASNNPVFLYYVTA
CCHHHCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEECCCCEEEEEEEE
WVNNGKTHTLPDIYGYDVTPNLSYINWAIVKKYLN
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]