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The map label for this gene is ygiX [H]

Identifier: 15602079

GI number: 15602079

Start: 238418

End: 239089

Strand: Direct

Name: ygiX [H]

Synonym: PM0214

Alternate gene names: 15602079

Gene position: 238418-239089 (Clockwise)

Preceding gene: 15602074

Following gene: 15602080

Centisome position: 10.56

GC content: 39.29

Gene sequence:

>672_bases
ATGCGAATTTTATTAATAGAAGATGATGCCTTAATTGGCAATGGCTTACAGATTGGGCTAACTAAATCGGGTTTTTTAGT
CGATTGGTTTCAGGATGGCAAAACAGGATTAGAGGCGGTAAAAAGTGCGCCTTATGATGCGGTTGTGTTAGATTTAACCT
TACCTAAAATGGATGGATTAGACATCTTGCAGCGTTGGCGTAAAGAAAAATACGATGTACCCGTATTAATTCTAACCGCA
CGCGATACGCTAGATGAACGAGTAATGGGATTGCAAAAAGGAGCTGATGATTATTTATGTAAACCTTTTGCATTAGTAGA
AGTAATTGCACGTTTGCAGGCACTCATTCGTCGTCGTTATGGGCAAGCTAGCCCAGTGATTGAACATAGCTTGGTCTGTT
TTGACCCGAATCAGCGCAAAGTGTTTTTAAGACAGGAAGAGGTGGCGTTAACGACGAGAGAATATAAGTTATTAGAGTTA
TTTATGTTGAATAAAGATCGCGTGCTTTCTCGCCGTATGATTGAAGAGAAACTTTATAACTGGGACGATGAAGTCAGTAG
TAATGCCTTGGAGGTCCATATTTATAATTTACGCCAAAAATTAGGGAAACAATTTATTCGTACTGTGCATGGTGTAGGGT
ATGCGCTAGGAAAAAATGATGAAATGGCTTAA

Upstream 100 bases:

>100_bases
CCTTAATCTTTGTCTGCTAGATTAAGGTCATGGAGAATGGGGATTTTCTTTATTTTTGTGTAAAATAAGAACAAGTTTTG
AAAAAAGTGCGGTCAAAAAA

Downstream 100 bases:

>100_bases
GCAAACAAGTTTACGGGTTCGTTTAATTTTCACGTTATCGTTGACCGCATTAGTGATTTGGTTAGCTTCAACCGCAGTGG
CGTGGTTTCAAGTAAGAAAA

Product: YgiX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGLDILQRWRKEKYDVPVLILTA
RDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRYGQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLEL
FMLNKDRVLSRRMIEEKLYNWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEMA

Sequences:

>Translated_223_residues
MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGLDILQRWRKEKYDVPVLILTA
RDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRYGQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLEL
FMLNKDRVLSRRMIEEKLYNWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEMA
>Mature_223_residues
MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGLDILQRWRKEKYDVPVLILTA
RDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRYGQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLEL
FMLNKDRVLSRRMIEEKLYNWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEMA

Specific function: Member of a two-component regulatory system qseB/qseC [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=63.4703196347032, Blast_Score=285, Evalue=2e-78,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=45.2488687782805, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=37.5, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=36.2385321100917, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=35.4545454545455, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=33.1818181818182, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=33.1858407079646, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=31.9634703196347, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=31.2217194570136, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=32.0175438596491, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=30.3030303030303, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=29.8245614035088, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=26.5486725663717, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790299, Length=123, Percent_Identity=34.1463414634146, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=31.7757009345794, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=27.0742358078603, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25655; Mature: 25655

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGL
CEEEEEECCCEECCCEEEEEECCCCEEEEHHCCHHHHHHHHCCCCCEEEEEEECCCCCCH
DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHC
GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN
CCCCCCHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
WDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEMA
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
>Mature Secondary Structure
MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGL
CEEEEEECCCEECCCEEEEEECCCCEEEEHHCCHHHHHHHHCCCCCEEEEEEECCCCCCH
DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHC
GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN
CCCCCCHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
WDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEMA
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]