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The map label for this gene is rpoE [C]

Identifier: 15602074

GI number: 15602074

Start: 234604

End: 235155

Strand: Direct

Name: rpoE [C]

Synonym: PM0209

Alternate gene names: 15602074

Gene position: 234604-235155 (Clockwise)

Preceding gene: 15602073

Following gene: 15602079

Centisome position: 10.39

GC content: 37.68

Gene sequence:

>552_bases
ATGCACAATATTTCATCAGAAGAATTAGAAACAATTCGTGGGCAAATGTTGAAATTTGCAACGTTGCAACTCAAAGATCC
TATTTTGGCAGAGGATGTGGTACAAGAAGCCTTTGTTAGCGCATTAAAAAATATAGAGAGTTTTAAACGACAATCCGCAT
TAAAAACATGGATCTTTGCGATTTTAAAGAACAAAATTATTGACTACTTGCGCGTTAATCATCGTTTTGTGGTAGAAAGC
GAACTTATCACTGATGAGGATGAAAATAGCTTTTTTGATGGTGGACGTTGGCGTAAAGAATATGCGCCTTCTCGTTTACA
AGAGAATGAAAATACGGTGTATTCTGAGCAATTTTGGGTGCTGTTTGAAGTGTGTTTGACGCGCTTACCTGCATTGCAAG
CGAAAGTCTTTATGATGCGTGAGTATTTAGAGCTGACATCAGAGGATATTTGTTCAACAGAACAAATAACAACCTCGAAT
TTGCATGTATTACTTTACCGTGCTCGTTTACAGCTGCAGCATTGTTTGACGACAAAAATGGGGGAGAGATAA

Upstream 100 bases:

>100_bases
TAGAAATTAAAATTCTAGCCTTTTTTGTCAATGTGATTGCTAGATTATTTACAGCCTTTAGGTTTTCAAATTTTGAATAT
TTAATGGATTAAAATAGGTT

Downstream 100 bases:

>100_bases
ATGAAATATTGTTTTAAAGTGACGAAACTCATCTCAGAATCTCATGAAAGACCATTATCCTTAGTCGAAAGCGTGGGGGT
TAGGTTACATCGTTTAATGT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MHNISSEELETIRGQMLKFATLQLKDPILAEDVVQEAFVSALKNIESFKRQSALKTWIFAILKNKIIDYLRVNHRFVVES
ELITDEDENSFFDGGRWRKEYAPSRLQENENTVYSEQFWVLFEVCLTRLPALQAKVFMMREYLELTSEDICSTEQITTSN
LHVLLYRARLQLQHCLTTKMGER

Sequences:

>Translated_183_residues
MHNISSEELETIRGQMLKFATLQLKDPILAEDVVQEAFVSALKNIESFKRQSALKTWIFAILKNKIIDYLRVNHRFVVES
ELITDEDENSFFDGGRWRKEYAPSRLQENENTVYSEQFWVLFEVCLTRLPALQAKVFMMREYLELTSEDICSTEQITTSN
LHVLLYRARLQLQHCLTTKMGER
>Mature_183_residues
MHNISSEELETIRGQMLKFATLQLKDPILAEDVVQEAFVSALKNIESFKRQSALKTWIFAILKNKIIDYLRVNHRFVVES
ELITDEDENSFFDGGRWRKEYAPSRLQENENTVYSEQFWVLFEVCLTRLPALQAKVFMMREYLELTSEDICSTEQITTSN
LHVLLYRARLQLQHCLTTKMGER

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21543; Mature: 21543

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNISSEELETIRGQMLKFATLQLKDPILAEDVVQEAFVSALKNIESFKRQSALKTWIFA
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKNKIIDYLRVNHRFVVESELITDEDENSFFDGGRWRKEYAPSRLQENENTVYSEQFWV
HHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCHHHHHCHHHHHCCCCCCHHHHHHH
LFEVCLTRLPALQAKVFMMREYLELTSEDICSTEQITTSNLHVLLYRARLQLQHCLTTKM
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GER
CCC
>Mature Secondary Structure
MHNISSEELETIRGQMLKFATLQLKDPILAEDVVQEAFVSALKNIESFKRQSALKTWIFA
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKNKIIDYLRVNHRFVVESELITDEDENSFFDGGRWRKEYAPSRLQENENTVYSEQFWV
HHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCHHHHHCHHHHHCCCCCCHHHHHHH
LFEVCLTRLPALQAKVFMMREYLELTSEDICSTEQITTSNLHVLLYRARLQLQHCLTTKM
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GER
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]